Jatropha Genome Database

JcCB0338871.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0338871.10 + phase: 0 /pseudo/partial
         (595 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29908.m006276 rab geranylgeranyl transferase alpha subunit, puta...   101   5e-21

>29908.m006276 rab geranylgeranyl transferase alpha subunit, putative
          Length = 2091

 Score =  101 bits (51), Expect = 5e-21
 Identities = 342/439 (77%)
 Strand = Plus / Plus

                                                                        
Query: 35   atgagccagcagctacaacatggcaattgaaaatcatagcagaataggtagaaaacttcc 94
            |||||||||| ||| | |||||||||   ||||| ||||||||| || |  ||  |||||
Sbjct: 1265 atgagccagcggctgctacatggcaagaaaaaattatagcagaagagattaaactcttcc 1324

                                                                        
Query: 95   gtgagttgtcagattgtaaaattggaaagctcactcttgcaagactgttgacagctcacg 154
            ||||||||||||| ||||||||||| ||||| || ||||||||| | ||  | ||||| |
Sbjct: 1325 gtgagttgtcagactgtaaaattggtaagcttacacttgcaagattattatctgctcatg 1384

                                                                        
Query: 155  attcgttaatgtcttgtaacgaattggtccattctgaagaagttcttagactatatagtg 214
            || | ||| |||| | | || |||  | |||||||||||||||||||||| ||||| || 
Sbjct: 1385 atgcattagtgtcctctgacaaatcagcccattctgaagaagttcttagattatattgtc 1444

                                                                        
Query: 215  actcgatgaagttggatccatcacattctcaatactacaaggacaaacgctgtttggttt 274
            | |  || |||||||||||| ||||| ||| ||||||||||||   || | | |||| ||
Sbjct: 1445 aattaattaagttggatccaacacatgctcgatactacaaggatgtacacagcttggctt 1504

                                                                        
Query: 275  tattctacttggtattctctggcagggaatctatagtaagtcgctgctttcactataagg 334
            ||||  |   |||    ||| |    || ||| |  | || |||||||||||||||| ||
Sbjct: 1505 tattgcaacaggtgacgtctagtcaagagtctgtgctgagccgctgctttcactataggg 1564

                                                                        
Query: 335  acttgacttcaccgagccatgcatatcccatgtgtttacgactcaataaattatcgttat 394
            || ||||||||   |||  ||  ||||| || ||||||||||| ||||| || || ||||
Sbjct: 1565 acgtgacttcattaagcagtggctatcctatatgtttacgactgaataacttgtccttat 1624

                                                                        
Query: 395  cacgaattgggtctgttgagaaattactgtgggtccaaatgccagacttgagccagaatg 454
            ||||||| ||| |||||||||||||| ||||||| ||||||| |||  ||||    ||||
Sbjct: 1625 cacgaataggggctgttgagaaattattgtgggttcaaatgctagatctgagttgcaatg 1684

                               
Query: 455  aacttcaatcaattgaagg 473
            ||||||||||||| |||||
Sbjct: 1685 aacttcaatcaatcgaagg 1703