Jatropha Genome Database

JcCB0335101.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0335101.10 - phase: 0 /pseudo/partial
         (1052 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29908.m006268 DNA binding protein, putative                           182   3e-45

>29908.m006268 DNA binding protein, putative
          Length = 1827

 Score =  182 bits (92), Expect = 3e-45
 Identities = 143/160 (89%)
 Strand = Plus / Plus

                                                                        
Query: 314  gttcagatctagtaagagctgctgcagttgctgctggggcccgtattgctactcaatcag 373
            |||||||||  ||||||||| |||||||||||||||| || |||||||||||||||||||
Sbjct: 1022 gttcagatccggtaagagctactgcagttgctgctggagctcgtattgctactcaatcag 1081

                                                                        
Query: 374  atgctgctaatttgctcaaggctgctcaggcaaagaacgctgtccatatcatgtcctcaa 433
            ||||||||   |||||||||||||||||||||||||| ||||||||||||||| || || 
Sbjct: 1082 atgctgcttcgttgctcaaggctgctcaggcaaagaatgctgtccatatcatgcccacag 1141

                                                    
Query: 434  gtggctcttcaatcaaaccagccttgcctgctggttcatc 473
            ||||||||||||| ||| |||| ||||||| |||| ||||
Sbjct: 1142 gtggctcttcaatgaaatcagcattgcctggtggtgcatc 1181



 Score = 60.0 bits (30), Expect = 3e-08
 Identities = 63/74 (85%)
 Strand = Plus / Plus

                                                                       
Query: 108 tgaggaacagcgagcggcacgtcatgcaatgaatatggctcttgatccaccagttaagaa 167
           |||||||  |||||| || ||||||||||||||| | || |||||||| |||||||||||
Sbjct: 813 tgaggaatggcgagcagcgcgtcatgcaatgaatttagcccttgatccgccagttaagaa 872

                         
Query: 168 cacatttacaaata 181
            | |||||| ||||
Sbjct: 873 taaatttactaata 886