Jatropha Genome Database

JcCB0334901.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0334901.10 + phase: 0 /pseudo/partial
         (627 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29727.m000491 FLU, putative                                           371   e-102

>29727.m000491 FLU, putative
          Length = 999

 Score =  371 bits (187), Expect = e-102
 Identities = 343/395 (86%)
 Strand = Plus / Plus

                                                                       
Query: 229 cctgttggtagtagaatacaagataatgaagtaattgttgatccaagaaaacagcaatta 288
           ||||||||||| ||||||  ||| |||||||| ||||||||||||||||| ||| | || 
Sbjct: 598 cctgttggtagcagaatagcagagaatgaagtgattgttgatccaagaaagcaggagttg 657

                                                                       
Query: 289 attgctcgattaaaaactggaaagaactttttgaggaatcaagatccagagaaggcatta 348
           ||| |||||||||||| |||||| || ||||||||||||||||||||||| |||||||| 
Sbjct: 658 atttctcgattaaaaagtggaaaaaaatttttgaggaatcaagatccagaaaaggcattt 717

                                                                       
Query: 349 gcagaatttaaggcagctcttgatcttgctcagagcatgaaggatccgatagaggagaag 408
           | ||| || ||||| |||||||| ||||||| |||  |||||||||| || |||||||||
Sbjct: 718 gaagagttcaaggctgctcttgagcttgctcggagtctgaaggatccaatggaggagaag 777

                                                                       
Query: 409 aaagctgcgagaggcttaggagcctcactgcaaaggcagggcaagtatcaggaagccatt 468
           || ||||| ||||| ||||| |||||||||||||||||||| |||||||  |||||||||
Sbjct: 778 aaggctgcaagaggtttaggggcctcactgcaaaggcagggaaagtatcgtgaagccatt 837

                                                                       
Query: 469 aaatatcactcgatggtccttgcaatctcccaacgagtaggagaggactctggaaacaca 528
           || |||||||| ||||| |||||||||||||||  || |||||| || ||||||||||| 
Sbjct: 838 aactatcactccatggttcttgcaatctcccaaaaagaaggagaagagtctggaaacacg 897

                                                                       
Query: 529 gaagcttatggtgcaatagctgattgttatactgaaattggagatcttgagcgagctgga 588
           || || ||||| |||||||||||||||||||||||| |||||||||||||  | ||||||
Sbjct: 898 gaggcctatggggcaatagctgattgttatactgaacttggagatcttgaaagggctgga 957

                                              
Query: 589 aaattctatgatcagtacattgcaaggttggaaaa 623
           || ||||||||| | ||||||||||| ||||||||
Sbjct: 958 aagttctatgataattacattgcaagattggaaaa 992



 Score = 73.8 bits (37), Expect = 1e-12
 Identities = 79/93 (84%)
 Strand = Plus / Plus

                                                                       
Query: 81  agatcctcagcaatggcatttcttgttacaaatgccctaatgtggactataccttttgaa 140
           ||||||||||  | ||||||||| ||||| |||||| | |||||||||  ||| ||||||
Sbjct: 328 agatcctcagtgacggcatttctggttactaatgccttgatgtggactgcaccatttgaa 387

                                            
Query: 141 gctgtagctgaaacatgtgaggctgataactcc 173
           ||| ||||||||||  | |||||||||||||||
Sbjct: 388 gctttagctgaaacccgcgaggctgataactcc 420