Jatropha Genome Database

JcCB0331501.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0331501.10 + phase: 0 /partial
         (252 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30174.m008934 mads box protein, putative                              280   4e-75
30147.m014137 mads box protein, putative                               58   3e-08

>30174.m008934 mads box protein, putative
          Length = 735

 Score =  280 bits (141), Expect = 4e-75
 Identities = 213/237 (89%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaaccaaaaccctcgagcggtatcaacgttgctgcttcactccccaagataacagcatt 60
           |||||||||||||| |||||||||||||||||||| |||||||| || ||||||||||||
Sbjct: 184 acaaccaaaacccttgagcggtatcaacgttgctgtttcactcctcaggataacagcatt 243

                                                                       
Query: 61  gaacgtgagacacagagctggtaccaagaggtagcgaagttgaaggcaaagtatgaatct 120
           |||||||| ||||||| |||||||||||| ||  |||| || |||||||| |||||||||
Sbjct: 244 gaacgtgaaacacagaactggtaccaagaagtgacgaaattaaaggcaaaatatgaatct 303

                                                                       
Query: 121 cttcaacgcactcaaaggcatttgcttggagaagatcttggcccgctgagcgtcaaggaa 180
           ||||||||||||||||||||||||||||| |||||||| || ||||| || || ||||||
Sbjct: 304 cttcaacgcactcaaaggcatttgcttggggaagatctcgggccgctaagtgtgaaggaa 363

                                                                    
Query: 181 ctgcaaaatcttgagaaacaacttgaaggagctcttgcactggctaggcaaagaaag 237
           ||||||||||| |||||||| || |||||||| |||||| | |||||||||||||||
Sbjct: 364 ctgcaaaatctcgagaaacagctggaaggagcccttgcattagctaggcaaagaaag 420


>30147.m014137 mads box protein, putative
          Length = 465

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 65/77 (84%)
 Strand = Plus / Plus

                                                                       
Query: 112 tatgaatctcttcaacgcactcaaaggcatttgcttggagaagatcttggcccgctgagc 171
           ||||||||||||||| ||  ||| || ||||||||||| ||||| ||||| ||||| || 
Sbjct: 52  tatgaatctcttcaatgctgtcagagtcatttgcttggggaagaacttggaccgcttagt 111

                            
Query: 172 gtcaaggaactgcaaaa 188
           || || |||||||||||
Sbjct: 112 gtgaaagaactgcaaaa 128