Jatropha Genome Database
- JcCB0317901.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0317901.10 - phase: 0 /partial
(841 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30170.m014167 5'->3' exoribonuclease, putative 892 0.0
30073.m002213 5'->3' exoribonuclease, putative 82 6e-15
>30170.m014167 5'->3' exoribonuclease, putative
Length = 3342
Score = 892 bits (450), Expect = 0.0
Identities = 669/742 (90%)
Strand = Plus / Plus
Query: 100 gatggcaaaggatcttttgtttgggccaaaaaagttgcacgtacatcttcatcagctagt 159
||||| |||||||||| |||| |||| | ||||| || ||| |||||||||||||||
Sbjct: 1447 gatggtaaaggatcttctgttcaggcccataaagtggcgcgtttgtcttcatcagctagt 1506
Query: 160 gttggtgctgccattgttgaagcagagaatagtctggaaatagaagcacatgaaaacaaa 219
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1507 gttggtgctgccattgttgaagcagagaatagtctggaaatagaagtacatgaaaacaaa 1566
Query: 220 gaagaattgaaaacgaagcttaaggagagacttcgtgagaagtctgatgtttttaactca 279
|| ||||||||| | ||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 1567 gacgaattgaaagctaagcttaaggagatacttcgtgagaagtctgatgcttttaactct 1626
Query: 280 aaaaatccagaagaagacaaggttaaattaggagaaccaggatggaaggaaaggtattat 339
|||||||| || ||||||||| ||| ||| ||||| ||||||||||||||||||||||||
Sbjct: 1627 aaaaatccggaggaagacaagattagattgggagatccaggatggaaggaaaggtattat 1686
Query: 340 gaagaaaagttttatgttaaaaccttggaggagcttgaagacataagaagggatgttgcc 399
||||| ||||| | || ||||| ||||| |||||||||||| ||||||||||||
Sbjct: 1687 gaagagaagttctctggaaaaactcctgaggaacttgaagacatacgaagggatgttgtt 1746
Query: 400 ttgaggtacactgaagggctatgttgggtcatgcactattactatgaaggagtttgttcc 459
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1747 ctgcggtacactgaaggactatgttgggtcatgcactattactatgaaggagtttgttct 1806
Query: 460 tggcagtggttttatccctatcattatgcaccctttgcttctgatctcaaaaatctagat 519
|||||||||||||| |||||||||||||| ||||||||||||||||||||| |||| | |
Sbjct: 1807 tggcagtggttttacccctatcattatgcgccctttgcttctgatctcaaacatctgggt 1866
Query: 520 cagatgaatattgagtttgaactaggttctccattcaaaccattcaatcagcttttggga 579
||| || | ||| |||||||||| |||||||||||||| ||||||||||||||| | ||
Sbjct: 1867 cagttggacattaagtttgaactgggttctccattcaagccattcaatcagcttcttggg 1926
Query: 580 gtttttcctgctgcaagttcccatgctcttcctgtgaattatagaaaattgatgactgat 639
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 1927 gtttttcctgctgcaagttcccatgctcttcctgtgcattatagaaaattgatgagtgat 1986
Query: 640 cccaattcacccattattgatttttaccccactgattttgaagtggacatgaatgggaag 699
|| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1987 ccgaattcacctattattgatttttaccctactgattttgaagtggacatgaatgggaag 2046
Query: 700 cggtatgcttggcagggtattgcaaagctgcccttcattgatgaagctcgcctacttgca 759
|| ||||| |||||||||||||||||| ||||||| |||||||||| ||| || |||||
Sbjct: 2047 cgttatgcatggcagggtattgcaaagttgccctttattgatgaagttcgtcttcttgcg 2106
Query: 760 gaggttaaaaagattgagcatacattaacggaggaggaagcaaggagaaacagtgtgatg 819
||||| ||||||||||| || ||| |||||||||||||||||||||||||||||| ||||
Sbjct: 2107 gaggtcaaaaagattgaacacacactaacggaggaggaagcaaggagaaacagtgcgatg 2166
Query: 820 tttgacatgctttttgtgttat 841
||||||||||||||||||||||
Sbjct: 2167 tttgacatgctttttgtgttat 2188
Score = 101 bits (51), Expect = 7e-21
Identities = 76/83 (91%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 1 aacctgagtccttggttccctgttgctcgatttcatggttctcgtcttgcttcagctcct 60
|||| ||||| |||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 1316 aaccagagtctttggttcca-gttgctcgatttcatggttctcgtcttgcctcagctcct 1374
Query: 61 tcactttcaccctttcagcacag 83
|||| |||||| |||||||||||
Sbjct: 1375 tcaccttcaccatttcagcacag 1397
>30073.m002213 5'->3' exoribonuclease, putative
Length = 4638
Score = 81.8 bits (41), Expect = 6e-15
Identities = 77/89 (86%)
Strand = Plus / Plus
Query: 412 gaagggctatgttgggtcatgcactattactatgaaggagtttgttcctggcagtggttt 471
|||||||| |||||||||||| || |||||||||||||| || || |||||||||||
Sbjct: 1504 gaagggctttgttgggtcatgagatactactatgaaggagtctgctcttggcagtggttc 1563
Query: 472 tatccctatcattatgcaccctttgcttc 500
|| || |||||||||||||| ||||||||
Sbjct: 1564 tacccttatcattatgcaccatttgcttc 1592