Jatropha Genome Database
- JcCB0314321.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0314321.10 - phase: 2 /pseudo/partial
(831 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29739.m003713 Auxin response factor, putative 981 0.0
30185.m000956 Auxin response factor, putative 123 2e-27
29599.m000177 Auxin response factor, putative 70 2e-11
29769.m000463 Auxin response factor, putative 60 2e-08
30170.m014161 Auxin response factor, putative 54 1e-06
>29739.m003713 Auxin response factor, putative
Length = 3360
Score = 981 bits (495), Expect = 0.0
Identities = 754/844 (89%), Gaps = 16/844 (1%)
Strand = Plus / Plus
Query: 1 gccaaccaaaacgacatctgctgactacaggttggagtgtgtttgtcagcacaaaaagac 60
|||||||||| |||||||||| || |||||||||||||| ||||| || |||||||| |
Sbjct: 551 gccaaccaaagagacatctgctcaccacaggttggagtgtctttgttagtacaaaaaggc 610
Query: 61 tttttgccggtgattctgttttatttataag----------------ctcctcttgggca 104
||||||| |||||||||||| |||| ||||| || |||||||| |
Sbjct: 611 tttttgctggtgattctgttctattcataagagacgaaaaatcacagcttctcttgggga 670
Query: 105 ttaggcgtgctaataggcaacagccagcactctcttcgtcagtcatatccagcgacagta 164
| |||||||||||||| ||||||||||| |||||||| |||||||||||||| ||||| |
Sbjct: 671 taaggcgtgctaatagacaacagccagctctctcttcatcagtcatatccagtgacagca 730
Query: 165 tgcatattggaattcttgctgctgcagcccatgctgctgcaaataacagtccatttgctg 224
|||||||||| ||||| ||||||||||| |||||||||||||||||||| |||||| ||
Sbjct: 731 tgcatattggcattctcgctgctgcagctcatgctgctgcaaataacagcccatttacta 790
Query: 225 tattttacaatccaagggcaagccctgctgagtttgtgattcccttctccaagtataaca 284
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 791 tattttacaatccaagggcaagcccttctgagtttgtgattcccttctcaaagtataaca 850
Query: 285 aggcaatgtatacacaagtttcactgggcatgagattcagaatgatgtttgagacggagg 344
| ||||||||||||||||||||||| |||||||| |||||||||||||| ||||| || |
Sbjct: 851 aagcaatgtatacacaagtttcactcggcatgaggttcagaatgatgttcgagactgaag 910
Query: 345 agtcaggagttcgtaggtacatgggcacaatcactggcatcagtgatttggatccagtga 404
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 911 agtcaggagttcgtagatacatgggcacaattactggcatcagtgatttggatccagtgc 970
Query: 405 ggtggaaaaattcacaatggcgcaatcttcaggttggatgggacgagtcaactgctggtg 464
| ||||||| |||||| |||||||||||||||||||||||||| || || ||||||||||
Sbjct: 971 gatggaaaacttcacagtggcgcaatcttcaggttggatgggatgaatctactgctggtg 1030
Query: 465 aacggccaagccgagtttcaatttgggaaattgaacccgttgtaactcctttctacattt 524
|||||||||||||||||||||||||||| |||| || ||||| ||||||||||||||||
Sbjct: 1031 aacggccaagccgagtttcaatttgggaggttgagcctgttgtgactcctttctacattt 1090
Query: 525 gtccacctccatttttcagacccaagttccctagacagccagggatgccagatgatgagt 584
||||||| |||||||| |||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 1091 gtccaccaccattttttagacccaagttccctaagcagccaggaatgccagatgatgagt 1150
Query: 585 ctgacattgagaatgcttttaaaagggccatgccctggcttggagatgattttggcatga 644
||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||
Sbjct: 1151 ctgacattgagaatgctttcaaaagagccatgccctggcttggagatgattttggcctga 1210
Query: 645 aagattccccaagctcaatttttcctggtttgagtttagttcagtggatgagcatgcaac 704
| ||| | | |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1211 aggatacgcaaagctcaattttccctggtttgagtttagttcagtggatgagcatgcaac 1270
Query: 705 aaaataatcagtttccagctgctcaagcaggattcttcccaccaatgcttccttccaatg 764
|||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||
Sbjct: 1271 aaaataatcagtttccaggtgcgcaagcaggattcttcccgtcaatgcttccttccaata 1330
Query: 765 ccttgcacaatagccttggctctgatgatccgtcgaagatattgaattttcaagcacctg 824
|||||||||||| ||| | ||||||||||||||||| || ||||||| ||||| ||||
Sbjct: 1331 ccttgcacaataacctaaccactgatgatccgtcgaagttactgaatttccaagcccctg 1390
Query: 825 gcct 828
||||
Sbjct: 1391 gcct 1394
>30185.m000956 Auxin response factor, putative
Length = 3330
Score = 123 bits (62), Expect = 2e-27
Identities = 246/305 (80%), Gaps = 3/305 (0%)
Strand = Plus / Plus
Query: 161 agtatgcatattggaattcttgctgctgcagcccatgctgctgcaaataacagtccattt 220
|||||||| ||||||||||| ||||| ||||| ||||| || |||||||| || || |||
Sbjct: 766 agtatgcacattggaattctagctgccgcagcacatgcagcagcaaataatagccccttt 825
Query: 221 gctgtattttacaatccaagggcaagccctgctgagtttgtgattcccttctccaagtat 280
|||| || |||||||||||||| || || | |||||||| || || || ||||||||
Sbjct: 826 actgtgttctacaatccaagggctagtccatcagagtttgttatccctttggccaagtat 885
Query: 281 aacaaggcaatgtata-ca--caagtttcactgggcatgagattcagaatgatgtttgag 337
|||||||| ||| | || ||| | || || |||||| | ||| | |||||||||||
Sbjct: 886 tacaaggcagtgtgcagcaaccaaatatcccttggcatgcgcttccggatgatgtttgaa 945
Query: 338 acggaggagtcaggagttcgtaggtacatgggcacaatcactggcatcagtgatttggat 397
|| || ||||||||| | ||||| ||||| ||||| || ||||| |||||| | |||
Sbjct: 946 actgaagagtcaggaacaagaaggtatatgggtacaattacaggcattagtgatcttgat 1005
Query: 398 ccagtgaggtggaaaaattcacaatggcgcaatcttcaggttggatgggacgagtcaact 457
|| || ||||||||||| ||||| ||||| ||||| |||||||||||||| |||||||||
Sbjct: 1006 cctgtaaggtggaaaaactcacagtggcgaaatctgcaggttggatgggatgagtcaact 1065
Query: 458 gctgg 462
|||||
Sbjct: 1066 gctgg 1070
>29599.m000177 Auxin response factor, putative
Length = 1437
Score = 69.9 bits (35), Expect = 2e-11
Identities = 98/119 (82%)
Strand = Plus / Plus
Query: 309 tgggcatgagattcagaatgatgtttgagacggaggagtcaggagttcgtaggtacatgg 368
|||||||| | || || ||| ||||||| || || |||||| | |||||| | |||||||
Sbjct: 881 tgggcatgcgctttaggatgctgtttgaaacagaagagtcaagtgttcgtcgctacatgg 940
Query: 369 gcacaatcactggcatcagtgatttggatccagtgaggtggaaaaattcacaatggcgc 427
||||||| |||||||| ||||| || ||||| || |||||| ||||||||| ||||||
Sbjct: 941 gcacaataactggcataagtgacttagatcctgttaggtggccaaattcacattggcgc 999
>29769.m000463 Auxin response factor, putative
Length = 2481
Score = 60.0 bits (30), Expect = 2e-08
Identities = 90/110 (81%)
Strand = Plus / Plus
Query: 356 cgtaggtacatgggcacaatcactggcatcagtgatttggatccagtgaggtggaaaaat 415
|||||||||||||| ||||| |||||||| |||||| ||||||| || | ||| ||||
Sbjct: 928 cgtaggtacatgggtacaataactggcataagtgatctggatcccgtacgttggccaaat 987
Query: 416 tcacaatggcgcaatcttcaggttggatgggacgagtcaactgctggtga 465
|| || |||||| | | ||||||| ||||| |||||||| ||||||||
Sbjct: 988 tctcattggcgctctgtcaaggttggctgggatgagtcaacagctggtga 1037
>30170.m014161 Auxin response factor, putative
Length = 2853
Score = 54.0 bits (27), Expect = 1e-06
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 158 gacagtatgcatattggaattcttgctgctgcagcccatgctgctgc 204
||||| ||||||||||| ||||||| |||||||| |||||||||||
Sbjct: 790 gacagcatgcatattggtgttcttgcagctgcagcgcatgctgctgc 836