Jatropha Genome Database

JcCB0308731.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0308731.10 + phase: 0 /TE
         (939 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28320.m001110 dead box ATP-dependent RNA helicase, putative           145   6e-34

>28320.m001110 dead box ATP-dependent RNA helicase, putative
          Length = 1815

 Score =  145 bits (73), Expect = 6e-34
 Identities = 139/161 (86%)
 Strand = Plus / Plus

                                                                       
Query: 454 attgatttgggaatgggtttaaatgagaatattaagaggtgtaagtatgtcaaaccaact 513
           |||||||| |||| ||||||||| |||||||| | ||||||||||||||| |||||||| 
Sbjct: 430 attgatttaggaaagggtttaaacgagaatataaggaggtgtaagtatgttaaaccaaca 489

                                                                       
Query: 514 cctattcagaagcatgccattcccattgcagttgctggtagagacttgatggcttgtgca 573
           |||||||| ||| | ||| | ||||||||  || ||||| | ||||| ||||||||||| 
Sbjct: 490 cctattcaaaagtacgccttacccattgctctttctggtcgtgacttaatggcttgtgct 549

                                                    
Query: 574 cagactgggtctggcaaaactgctgccttttgttttcctat 614
           || ||||| ||||| ||||||||||||||||||||||||||
Sbjct: 550 caaactggctctggtaaaactgctgccttttgttttcctat 590



 Score = 67.9 bits (34), Expect = 1e-10
 Identities = 73/86 (84%)
 Strand = Plus / Plus

                                                                       
Query: 850 tgccagattcacgatgaggcgcagaaattcgcttataacactggggtgaaagttgtggtt 909
           |||||||||||||| ||||| |||||||| |||||||| ||||| || ||  ||||||||
Sbjct: 706 tgccagattcacgaggaggcacagaaatttgcttataatactggtgtaaagattgtggtt 765

                                     
Query: 910 gcctatggaggggcacccataataca 935
           || ||||| || || |||||| ||||
Sbjct: 766 gcatatgggggagctcccatagtaca 791



 Score = 60.0 bits (30), Expect = 3e-08
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                 
Query: 688 tctgcactcattctatctcctaccagagagttgtcttg 725
           ||||| |||||| |||||||||||||||||||||||||
Sbjct: 670 tctgctctcattttatctcctaccagagagttgtcttg 707