Jatropha Genome Database

JcCB0308331.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0308331.10 + phase: 0 /partial
         (180 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30190.m010886 rab9 and, putative                                      222   5e-58
30146.m003584 rab9 and, putative                                       96   8e-20
28644.m000913 rab9 and, putative                                       78   2e-14

>30190.m010886 rab9 and, putative
          Length = 621

 Score =  222 bits (112), Expect = 5e-58
 Identities = 163/180 (90%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgccttcccgtcgaagaactctcttgaaggtcataatcctcggcgatagcggggtcggg 60
           |||||||| ||||| ||||||||  | |||||||| || |||||||| |||||||| || 
Sbjct: 1   atgccttcacgtcgtagaactcttcttaaggtcattattctcggcgacagcggggtggga 60

                                                                       
Query: 61  aagacctctttgatgaatcaatatgtgaataagaagtttagcaatcaatataaggcaaca 120
           || || |||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 61  aaaacttctttgatgaatcaatatgtaaataagaagtttagcaatcaatacaaggcaaca 120

                                                                       
Query: 121 atcggagctgatttcttgactaaggaagtgcagtttgaagataggctcttcactttacag 180
           || |||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 121 attggagctgatttcttgactaaggaagttcaatttgaagataggctcttcactttacag 180


>30146.m003584 rab9 and, putative
          Length = 624

 Score = 95.6 bits (48), Expect = 8e-20
 Identities = 114/136 (83%)
 Strand = Plus / Plus

                                                                       
Query: 28  aaggtcataatcctcggcgatagcggggtcgggaagacctctttgatgaatcaatatgtg 87
           ||||||||||| ||||| || |||||||| |||||||| || ||||||||||| ||||||
Sbjct: 28  aaggtcataattctcggtgacagcggggtagggaagacatcattgatgaatcagtatgtg 87

                                                                       
Query: 88  aataagaagtttagcaatcaatataaggcaacaatcggagctgatttcttgactaaggaa 147
           |||   |||||||| || || ||||| || ||||| ||||||||||| ||||| || |||
Sbjct: 88  aatcgtaagtttagtaaccagtataaagcgacaataggagctgattttttgacaaaagaa 147

                           
Query: 148 gtgcagtttgaagata 163
           || || ||||| ||||
Sbjct: 148 gttcaatttgaggata 163


>28644.m000913 rab9 and, putative
          Length = 618

 Score = 77.8 bits (39), Expect = 2e-14
 Identities = 81/95 (85%)
 Strand = Plus / Plus

                                                                       
Query: 40  ctcggcgatagcggggtcgggaagacctctttgatgaatcaatatgtgaataagaagttt 99
           ||||||||||||||||| || ||||| ||||||||||||||||| ||| | |||||||||
Sbjct: 40  ctcggcgatagcggggttggcaagacttctttgatgaatcaatacgtgcacaagaagttt 99

                                              
Query: 100 agcaatcaatataaggcaacaatcggagctgattt 134
           ||  | || ||||| || ||||| || ||||||||
Sbjct: 100 agtcagcagtataaagctacaataggtgctgattt 134