Jatropha Genome Database
- JcCB0305141.40
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0305141.40 - phase: 2 /pseudo/partial
(1015 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30143.m001222 Rop guanine nucleotide exchange factor, putative 599 e-170
28934.m000056 Rop guanine nucleotide exchange factor, putative 119 3e-26
29683.m000479 Rop guanine nucleotide exchange factor, putative 62 7e-09
>30143.m001222 Rop guanine nucleotide exchange factor, putative
Length = 1773
Score = 599 bits (302), Expect = e-170
Identities = 597/695 (85%), Gaps = 9/695 (1%)
Strand = Plus / Plus
Query: 266 tcaactgaaaatgtagctctagatattgcaaaccgtgtggaatctgcaatatatgtatgg 325
||||||||| |||| |||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 997 tcaactgaacatgttgctctagatactgcaaaccgtgtggaatctgctatatatgtatgg 1056
Query: 326 cgtaagagagttcattcaaagcctccaacatatccaaaccggtccacagcaagatcatca 385
|||| |||| ||||||||| |||| | ||||||||||||||||| ||||| ||||||
Sbjct: 1057 cgtagaagagctcattcaaaacctcaagtttatccaaaccggtccactgcaaggtcatca 1116
Query: 386 tgggagatagtgaaggacttaatggttgatggagataagagggaactgcttgcagaaaga 445
||||| || || ||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 1117 tgggatatggtcaaggatttcatggttgatggagataagagggaactgcttgcagaaaga 1176
Query: 446 gcagaaagcctcctgctttcgttaaagcaacggttccctagtctaagccagactacatta 505
|||||||||||||||||||| | ||||| ||||||||||||||||| ||||| |||||
Sbjct: 1177 gcagaaagcctcctgctttccctgaagcagcggttccctagtctaagtcagaccacattg 1236
Query: 506 gatacaagcaaaatacaatttaacaaggatgtcggaaaatccattcttgaaagctattca 565
||||| |||||||| ||||| ||||||||||| |||||||| ||||||||||||||||||
Sbjct: 1237 gataccagcaaaatccaattcaacaaggatgttggaaaatctattcttgaaagctattca 1296
Query: 566 agagttctggagagtttggcatttaacattgtggcacgtattgatgatttgctatatgtt 625
||| | || |||||||||||||| |||||||| || ||||||||||| |||||||||||
Sbjct: 1297 agaatcctagagagtttggcattcaacattgtagctcgtattgatgacttgctatatgtg 1356
Query: 626 gatgacttgacaaaacattcagacaaattatcagtttccagtgtcagtgtcattgctcac 685
||||||||||| ||||||||||| |||||| |||||||| ||||| || |||||||||
Sbjct: 1357 gatgacttgactaaacattcagataaattacaagtttccacagtcagcgtgattgctcac 1416
Query: 686 aagaaagtttcactcccttattctgtgcctgtctcaggcactccatacaaagcaacattt 745
||||| ||| | ||||||| |||||||||||||||||||||||||||| | ||||||||
Sbjct: 1417 aagaaggttacgatcccttactctgtgcctgtctcaggcactccatacagaacaacattt 1476
Query: 746 agtacgccaagcttttcgcccgcaccacctcttatcagtcctgctagaggagaaagaact 805
||||| |||||||||||||| | |||| ||||| ||||| || || ||||||||||||
Sbjct: 1477 agtacaccaagcttttcgcctg---caccccttattagtccggcgaggggagaaagaact 1533
Query: 806 ccatttttgcacaacattacca------tgtccaacaacaacaacaagcctcaccgtcgc 859
|||||| | | ||| | ||| ||||||||| |||||||||||| ||||||
Sbjct: 1534 ccatttctccctaacgctgccaccgccgccaccaacaacagcaacaagcctcatcgtcgc 1593
Query: 860 ggttttggagtaaaaagagtgttgacaaattatcttggcggtgacacaaaagcaaagatc 919
|| || ||||| |||||||||||||| ||||||||||||| |||| ||||| ||| |||
Sbjct: 1594 ggcttcggagtgaaaagagtgttgacgaattatcttggcgttgactcaaaaccaaggata 1653
Query: 920 tgtggtaatcaaacagacggcttatgtccaaattc 954
||||| ||| ||| || || | ||||||||||||
Sbjct: 1654 tgtggcaattcaactgaagggtcatgtccaaattc 1688
Score = 250 bits (126), Expect = 1e-65
Identities = 222/254 (87%)
Strand = Plus / Plus
Query: 4 tggtatgttgatcaaggcattgtagctccagatgcagatggttcagcttctttcagaaag 63
||||||||||||||||| |||||||| |||||||||||||| ||| | ||||| | ||
Sbjct: 649 tggtatgttgatcaagggattgtagccccagatgcagatggatcaacctcttttcgcaaa 708
Query: 64 acaattcagagacaagaggagaagtggtggctgcctgtaccccgtatccccgctggtggc 123
|||| ||||| |||||||||||||||||||| |||||||||||| |||| ||||||||
Sbjct: 709 gcaatccagaggcaagaggagaagtggtggcttcctgtaccccgtctccctgctggtggt 768
Query: 124 ctaagtgataattcaagaaagcagttgaaccatacacgcgaatgcactaatcaaatacta 183
|| |||||||| ||||||||||| |||||||| || || |||||||| ||||||||| ||
Sbjct: 769 cttagtgataaatcaagaaagcaattgaaccacactcgtgaatgcacaaatcaaatatta 828
Query: 184 aaagctgcaatggctatcaatagtattgctttagctgaaatggaagttcctgactcatac 243
|||||||||||||| ||||| || |||||||| ||||||||||| |||||| ||||||||
Sbjct: 829 aaagctgcaatggcaatcaacagcattgctttggctgaaatggatgttccttactcatac 888
Query: 244 atggaagcacttcc 257
||||| |||||||
Sbjct: 889 ttggaaacacttcc 902
>28934.m000056 Rop guanine nucleotide exchange factor, putative
Length = 2022
Score = 119 bits (60), Expect = 3e-26
Identities = 192/236 (81%)
Strand = Plus / Plus
Query: 413 gatggagataagagggaactgcttgcagaaagagcagaaagcctcctgctttcgttaaag 472
|||| |||||||||||| ||||||||||| ||||||| ||||| || |||| || |||
Sbjct: 1513 gatgcagataagagggatctgcttgcagatcgagcagagagccttcttctttgcttgaag 1572
Query: 473 caacggttccctagtctaagccagactacattagatacaagcaaaatacaatttaacaag 532
|| || ||||| |||| ||||| || ||||||| |||||||| || | ||||||
Sbjct: 1573 cagcgattcccaggtcttccacagacaaccttagatatgagcaaaattcagtacaacaag 1632
Query: 533 gatgtcggaaaatccattcttgaaagctattcaagagttctggagagtttggcatttaac 592
||||| || || || ||||| || ||||| ||||||||| | |||||||||||||| ||
Sbjct: 1633 gatgttgggaagtctattctagagagctactcaagagttttagagagtttggcattcaat 1692
Query: 593 attgtggcacgtattgatgatttgctatatgttgatgacttgacaaaacattcaga 648
|| || ||||| ||||||||| |||| ||||||||||| ||||| |||||||||||
Sbjct: 1693 atcgttgcacggattgatgatctgctctatgttgatgatttgaccaaacattcaga 1748
Score = 85.7 bits (43), Expect = 5e-16
Identities = 142/175 (81%)
Strand = Plus / Plus
Query: 76 caagaggagaagtggtggctgcctgtaccccgtatccccgctggtggcctaagtgataat 135
|||||||| ||||||||||| ||||| || || | || || ||||||| ||| |||
Sbjct: 1090 caagaggaaaagtggtggctacctgtgcctcgagttcctccttgtggcctccatgaaaat 1149
Query: 136 tcaagaaagcagttgaaccatacacgcgaatgcactaatcaaatactaaaagctgcaatg 195
||||||||| | ||| | |||| ||| || ||||| ||||| || |||||||||||||||
Sbjct: 1150 tcaagaaaggaattgcagcataaacgtgattgcacaaatcagatgctaaaagctgcaatg 1209
Query: 196 gctatcaatagtattgctttagctgaaatggaagttcctgactcatacatggaag 250
|| ||||| || ||| |||||||||| |||||||| ||||| ||||| ||||||
Sbjct: 1210 gcaatcaacagcattactttagctgatatggaagtccctgaaacatacttggaag 1264
>29683.m000479 Rop guanine nucleotide exchange factor, putative
Length = 1743
Score = 61.9 bits (31), Expect = 7e-09
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 527 aacaaggatgtcggaaaatccattcttgaaagctattcaagagttctggagagtttggca 586
||||||||||| || | || ||||||||||||||||||||||| ||||||| |||||
Sbjct: 1306 aacaaggatgttgggcagtcaattcttgaaagctattcaagagtaatggagagcttggcc 1365
Query: 587 tttaacattgtggca 601
|| |||||| |||||
Sbjct: 1366 ttcaacattatggca 1380