Jatropha Genome Database

JcCB0301651.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0301651.10 + phase: 0 /partial
         (638 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29900.m001593 conserved hypothetical protein                          190   7e-48

>29900.m001593 conserved hypothetical protein
          Length = 1656

 Score =  190 bits (96), Expect = 7e-48
 Identities = 276/336 (82%)
 Strand = Plus / Plus

                                                                       
Query: 303 tccttcagctagtaagcgtgagcaagctccaaagcctgctcgaaagccagaatcaagact 362
           |||||| ||||||||| |||||||| |  ||||| |||||||||||| |||||||||  |
Sbjct: 315 tccttctgctagtaagagtgagcaaccagcaaaggctgctcgaaagcaagaatcaaggtt 374

                                                                       
Query: 363 gtcagttatacttctcgatcaaggcttgttcactgtgtataagcggctttttgtcgtttc 422
           ||| || ||| | || ||||||||||||||||| ||||| |||||||||||| || ||||
Sbjct: 375 gtcggtaatattgcttgatcaaggcttgttcaccgtgtacaagcggctttttatcatttc 434

                                                                       
Query: 423 attgaccttgaacattaccgctttggttcttgcagctaccagccacttcccatatgcaag 482
            ||||||||||||||    | |||  | |||||||||||  |  |||| || ||||||||
Sbjct: 435 cttgaccttgaacatgctaggtttaatccttgcagctactggaaactttccgtatgcaag 494

                                                                       
Query: 483 aaacagagccgctctattttctatagccaatatccttgctttgacgctttgtagaagcga 542
           |||||  || || || ||| | |||||||| || |||||| |||| || || || |||||
Sbjct: 495 aaacaaggctgcactctttgccatagccaacattcttgctctgacactatgcaggagcga 554

                                                                       
Query: 543 agcctttctgcgagttgttttctggcttgcagtgaaagtattgggaaggtcttggatacc 602
           ||||||  ||||||| ||||||||||||||||| || || || || || |||||||| ||
Sbjct: 555 agccttcttgcgagtagttttctggcttgcagtcaaggtgtttgggagatcttggatgcc 614

                                               
Query: 603 tctcccaatcaagactgctactacctctcttcttca 638
           ||| |||||||||||||| || ||||||||||||||
Sbjct: 615 tcttccaatcaagactgcaacgacctctcttcttca 650



 Score = 69.9 bits (35), Expect = 2e-11
 Identities = 62/71 (87%)
 Strand = Plus / Plus

                                                                      
Query: 1  atgcaaagtccggtgaggttttcaagttgccgaggagtggcgtttgagatcaaacctcat 60
          |||||||| || || || |||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 1  atgcaaagcccagtaagattttcaagctgccgaggagtggcttttgaaatcaaacctcat 60

                     
Query: 61 tctaatccatt 71
           || |||||||
Sbjct: 61 cctgatccatt 71



 Score = 60.0 bits (30), Expect = 2e-08
 Identities = 82/98 (83%), Gaps = 6/98 (6%)
 Strand = Plus / Plus

                                                                       
Query: 115 ttttggttttcttggtttcaag---ggaactcctcaaaagtgttcccttctactactatt 171
           |||||| |||||||||||||||   | | |||||| ||||||||||||||| ||    ||
Sbjct: 121 ttttggctttcttggtttcaagctggtagctcctctaaagtgttcccttcttctg---tt 177

                                                 
Query: 172 caaaggtctgtgagtcgagctagtagccatttctgtga 209
           ||||| ||||| |||||||  |||||||||||||||||
Sbjct: 178 caaagatctgtaagtcgaggcagtagccatttctgtga 215