Jatropha Genome Database

JcCB0297231.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0297231.10 + phase: 0 
         (783 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29814.m000736 r2r3-myb transcription factor, putative                 244   7e-64
29801.m003096 r2r3-myb transcription factor, putative                  52   5e-06
29970.m000987 r2r3-myb transcription factor, putative                  52   5e-06

>29814.m000736 r2r3-myb transcription factor, putative
          Length = 795

 Score =  244 bits (123), Expect = 7e-64
 Identities = 255/299 (85%)
 Strand = Plus / Plus

                                                                       
Query: 37  aaaggatcttggagtccacaagaagatgctaatttaattaaactagtagagcaacacggt 96
           ||||| ||||||||||||||||||||||||||| | || ||  |||| |||||||| |||
Sbjct: 46  aaaggttcttggagtccacaagaagatgctaatctgataaagttagtggagcaacatggt 105

                                                                       
Query: 97  cccagaaactggtcattgataagcaccggaattcctggtcggtctggaaaatcttgtcga 156
           || ||||| ||||| ||||| ||||| ||||| |||||| ||||||| |||||||| || 
Sbjct: 106 ccgagaaattggtctttgattagcactggaatacctggtaggtctggcaaatcttgccgt 165

                                                                       
Query: 157 ctgcggtggtgcaaccagctctctccggaagttcagcaccgtccgttctctccagcggag 216
           || |||||||||||||||||||| || || |||||||||||||| ||| |||| |  || 
Sbjct: 166 ctacggtggtgcaaccagctctccccagaggttcagcaccgtcccttcactcctgatgaa 225

                                                                       
Query: 217 gatgctataattgttcaagctcatgcaattcatggcaataaatgggctacgattgctaga 276
           |||||| | |||||||| || |||||  ||||||| |||||||||||||| |||||||||
Sbjct: 226 gatgctgttattgttcaggcacatgccgttcatggtaataaatgggctactattgctaga 285

                                                                      
Query: 277 ctcttgcctggccgtacagataacgctataaagaatcattggaactcaactttacgtcg 335
           || |||||||| ||||| ||||| || || ||||||||||||||||| ||| |||||||
Sbjct: 286 ctattgcctggtcgtactgataatgcaatcaagaatcattggaactctactctacgtcg 344


>29801.m003096 r2r3-myb transcription factor, putative
          Length = 738

 Score = 52.0 bits (26), Expect = 5e-06
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                         
Query: 285 tggccgtacagataacgctataaagaatcattggaactcaacttta 330
           ||||||||| ||||| || || ||||||||||||||||| ||||||
Sbjct: 279 tggccgtactgataatgccattaagaatcattggaactctacttta 324


>29970.m000987 r2r3-myb transcription factor, putative
          Length = 1020

 Score = 52.0 bits (26), Expect = 5e-06
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 286 ggccgtacagataacgctataaagaatcattggaactc 323
           |||||||| |||||||| || |||||||||||||||||
Sbjct: 283 ggccgtacggataacgccattaagaatcattggaactc 320