Jatropha Genome Database
- JcCB0293691.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0293691.20 - phase: 1 /partial
(1013 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
27446.m000478 ubiquitin-protein ligase, putative 654 0.0
>27446.m000478 ubiquitin-protein ligase, putative
Length = 1332
Score = 654 bits (330), Expect = 0.0
Identities = 534/602 (88%)
Strand = Plus / Plus
Query: 1 attttacaccaagaatcactggatgtgggatattatctgttgttgtgggctgcaaaatac 60
|||| ||||||||||||||||| ||||| ||||||||| ||||| | || ||||||| |
Sbjct: 389 atttcacaccaagaatcactggttgtggcatattatctcttgttataggttgcaaaaatc 448
Query: 61 tcactgttctccacctcaacagatgtctaaatgttactagtgttgaatggttggaatacc 120
||| || | ||||| ||| ||||||| |||||||| ||||| |||||| |||||||||
Sbjct: 449 tcatcatttttcaccttaaccgatgtctcaatgttaccagtgtggaatggctggaatacc 508
Query: 121 ttggcaagcttgaaacacttgaagacctttcaattaaaaattgtagagtgattggggaag 180
||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
Sbjct: 509 ttggcaagcttgaaacacttgaagacctttcaattaagaattgtcgagtgattggggagg 568
Query: 181 gtgatttgattaagttaggatacagctggcgaaaagtcaaaaagttgcagtttgaagtcg 240
|||| ||||||||| |||||| |||||||||| | |||| ||||||||||| || |
Sbjct: 569 gtgacttgattaagataggatctggctggcgaaagctaaaaagattgcagtttgaggtgg 628
Query: 241 atgctaattacagatatatgaaggtttatgatcgattagctgtagatcgatggcaaaagc 300
|||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||
Sbjct: 629 atgctaattacagatatatgaaggtttatgatcggttggctgtagatagatggcaaaagc 688
Query: 301 aattagtcccatgtgaatctatgttggagcttagcctggtgaattgcattatcagcccag 360
|||| || || ||||||||| | ||||| ||||||||||| |||||||| ||||||||||
Sbjct: 689 aattggtgccgtgtgaatctttattggaacttagcctggttaattgcatcatcagcccag 748
Query: 361 gcagagggcttgcttgtgtgttgggaaagtgcaagaacttggagaagattcatttggaca 420
| ||||| ||||||||||| |||||||||||||||||| |||| ||||||||||||||||
Sbjct: 749 ggagaggacttgcttgtgtattgggaaagtgcaagaacctggaaaagattcatttggaca 808
Query: 421 tgtgtgttggggtaagggactgtgacattataggcttagcccaaaaatcaagaaatcttc 480
||||||||||||| ||||||| |||||| |||||||| || |||||||||||||||||||
Sbjct: 809 tgtgtgttggggtgagggactatgacatcataggcttggctcaaaaatcaagaaatcttc 868
Query: 481 ggtcaatttccctccgagttccttctgatttctccttgccacttctgctaaacaaccctt 540
|||||||||||||||||||||| || |||||||||||||| |||||||| ||||| ||||
Sbjct: 869 ggtcaatttccctccgagttccctcagatttctccttgccccttctgctgaacaatcctt 928
Query: 541 tgaggttaacagatgatagtcttaaagcagtggctcaaaattgtaaaatgcttgaatctg 600
|||| ||||||||||| ||||||||||| |||||||||| ||| ||||||||||||||
Sbjct: 929 tgagattaacagatgaaagtcttaaagcgttggctcaaaactgtccaatgcttgaatctg 988
Query: 601 ta 602
||
Sbjct: 989 ta 990
Score = 287 bits (145), Expect = 6e-77
Identities = 277/321 (86%)
Strand = Plus / Plus
Query: 693 gaactttctcttgaccatgtgtattccttcaatgacactgggatggaagctctttgtatg 752
|||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||| |
Sbjct: 1009 gaacttgctcttgaccacgtgtattccttcaatgacattgggatggaagctctttgttcg 1068
Query: 753 gctcagtttcttgaaacattagagcttgtcagatgccaagagatcagcgacgagggtttg 812
||||||| |||||| | || |||||||| ||||||||||| | || || ||||| ||
Sbjct: 1069 gctcagtatcttgagaacttggagcttgtaagatgccaagaagttagtgatgaggggctg 1128
Query: 813 cagctcgctgcccattttcctcgcttgtgcatattacggttaaggaagtgtttgggaatg 872
||||| | |||| ||||||||||||||||| ||| |||||| ||||||||||| |
Sbjct: 1129 cagcttgtgacccagtttcctcgcttgtgcattttaaggttaaaaaagtgtttggggctt 1188
Query: 873 acagatgatgggttaatgcctcttattgggtcgtacaagttggaaacattgacagtggaa 932
|||||||||||||||| |||||||||||||| ||||| ||||| |||||||||||
Sbjct: 1189 acagatgatgggttaaaacctcttattgggtcatacaaaatggaattcctgacagtggaa 1248
Query: 933 gattgtcctcaaatttctgaaaggggtgttcaaggagctgcaagaacggtgtcattccga 992
|||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||
Sbjct: 1249 gattgtcctcaaatttctgaaaggggtgttcaaggaactgcaagatctgtgtcattccgg 1308
Query: 993 caggacttgtcatggatgtat 1013
|| ||||||||||||||||||
Sbjct: 1309 caagacttgtcatggatgtat 1329