Jatropha Genome Database

JcCB0289031.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0289031.10 + phase: 0 /partial
         (396 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30009.m000840 U3 small nucleolar RNA-interacting protein, putative    404   e-112

>30009.m000840 U3 small nucleolar RNA-interacting protein, putative
          Length = 1719

 Score =  404 bits (204), Expect = e-112
 Identities = 300/332 (90%)
 Strand = Plus / Plus

                                                                       
Query: 10  caggttctagcattggctgttagctctgatggtcggtatttggcaagtggaggattagat 69
           |||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||| |||
Sbjct: 667 caggttctagcattggctgttagcactgatggacggtatttggcaactggaggattggat 726

                                                                       
Query: 70  cggcatgttcacatatgggacactcggacaagagaacatattcaggcttttccaggtcat 129
           || ||| ||||| | |||||||| ||  ||| | |||||||||||||||| |||||||||
Sbjct: 727 cgccatattcacttgtgggacacacgtgcaaaacaacatattcaggctttcccaggtcat 786

                                                                       
Query: 130 agagggcctgtgtcatgcctaacttttaggcaaggcacttcagaacttttctctggttcc 189
           ||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| 
Sbjct: 787 agagggcctgtgtcatgcctaacttttaggcaagggacttctgaacttttttctggttca 846

                                                                       
Query: 190 tttgatcgatcaattaaagtatggaatgtggaagacagggcttatataaacacgttgttt 249
           |||||||||||||| ||  |||||| |||||||||||| |||||| |||| || ||||||
Sbjct: 847 tttgatcgatcaatcaagatatggagtgtggaagacagagcttatgtaaatacattgttt 906

                                                                       
Query: 250 ggtcaccaaagtgaagttttgactgttgattgcctgcggaaagaacggttgttggctact 309
           ||||||||||||||||| || || |||||||||||||||||||||||| |||||||||||
Sbjct: 907 ggtcaccaaagtgaagtattaacagttgattgcctgcggaaagaacgggtgttggctact 966

                                           
Query: 310 ggacgtgatcggactatgcagttgtttaaggt 341
           ||||||||||| |||||||| |||||||||||
Sbjct: 967 ggacgtgatcgaactatgcaattgtttaaggt 998