Jatropha Genome Database

JcCB0288671.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0288671.10 - phase: 0 /pseudo
         (766 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29648.m002014 replication factor C / DNA polymerase III gamma-ta...   531   e-150

>29648.m002014 replication factor C / DNA polymerase III gamma-tau
           subunit, putative
          Length = 1083

 Score =  531 bits (268), Expect = e-150
 Identities = 465/528 (88%), Gaps = 2/528 (0%)
 Strand = Plus / Plus

                                                                       
Query: 123 taaagccgttccttgggtggagaagtatcggcctcagtcacttgcggatgtcgctgctca 182
           |||||||  |||||||||||| |||||||| ||||||||||| || || || ||||||||
Sbjct: 102 taaagccactccttgggtggaaaagtatcgtcctcagtcactcgctgacgtggctgctca 161

                                                                       
Query: 183 tcgcgacattgttgataccatcgataggctcaccagtgaaaatagactgccccatctcct 242
           |||||| |||||||||||||| |||||||| |||| |||||||||| |||| ||| |  |
Sbjct: 162 tcgcgatattgttgataccattgataggctgaccaatgaaaatagattgccacatttgtt 221

                                                                       
Query: 243 gctatatggtcctcctggcactggaaaaacttcgactattcttgctgtggcgcgtaaact 302
            || |||||||||||||||||||| |||||||| ||||||||||| |||||||| |||||
Sbjct: 222 actttatggtcctcctggcactgggaaaacttctactattcttgccgtggcgcgaaaact 281

                                                                       
Query: 303 gtatggagcacagtaccacaatatgattttggagctgaatgcatcagatgacaggggaat 362
            ||||||| ||| ||||| ||||||||||||||||| |||||||||||||| || || ||
Sbjct: 282 atatggagtacaataccataatatgattttggagcttaatgcatcagatgatagaggcat 341

                                                                       
Query: 363 tggtgtggtgcgacagcagatacaagattttgctagcactcagagcttctctttcagtgc 422
           || ||| ||  |||||||||| |||||||||||||||||||| |||||||||||   |||
Sbjct: 342 tgatgttgtcagacagcagattcaagattttgctagcactcaaagcttctcttttgatgc 401

                                                                       
Query: 423 aaagtcatctgtaaagttggtcttactagatgaggcagatgccatgacaaaggatgcaca 482
           ||||||| |||||||||||||||| || || |||||||| || ||||||||||| |||||
Sbjct: 402 aaagtcagctgtaaagttggtcttgctggacgaggcagacgcaatgacaaaggacgcaca 461

                                                                       
Query: 483 atttgccttgcgtagagtgattgagaaatacacgaagaacactcgatttacccttatctg 542
           |||||||||||||||||| ||||||||||| || |||||||| |||||| | || || ||
Sbjct: 462 atttgccttgcgtagagtcattgagaaatataccaagaacacacgatttgcactcatatg 521

                                                                       
Query: 543 taatcatgtgaacaagattattccagcactacagtctagatgtactacggtttcgatttt 602
           |||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||
Sbjct: 522 taatcatgtgaacaagattattccagcactacagtctagatgtact-cgatttcg-tttt 579

                                                           
Query: 603 gctcctcttgatccaatacatgtttctgaacgactaaaacatgttata 650
           |||||||||||||| ||||||||  |||| ||||| ||||||||||||
Sbjct: 580 gctcctcttgatcctatacatgtcactgaccgactcaaacatgttata 627