Jatropha Genome Database

JcCB0286801.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0286801.10 - phase: 0 /partial
         (654 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30189.m001642 nucleic acid binding protein, putative                   88   8e-17

>30189.m001642 nucleic acid binding protein, putative
          Length = 849

 Score = 87.7 bits (44), Expect = 8e-17
 Identities = 155/192 (80%)
 Strand = Plus / Plus

                                                                       
Query: 10  gagagaaatttgcttaattccaagttgattgagtttgagaacttgattcgaaacccctat 69
           ||||||||||| || | |||||||||||| |||||||||||| || |||| || || |||
Sbjct: 499 gagagaaatttactaagttccaagttgatcgagtttgagaacctgcttcgtaatccttat 558

                                                                       
Query: 70  gtagcacccgcaaagtctgctctcagccagagtccgtttgcaggagtcactcctcctgca 129
           | ||||||  ||||||| ||| ||||||||||||| ||  | ||||| |||||   ||||
Sbjct: 559 gcagcacctccaaagtcagctttcagccagagtccattccctggagtaactcccaatgca 618

                                                                       
Query: 130 attgcaactagtgatcaaaataatgcccctcctttagtatccagtttcagtcaactgggc 189
           ||     |||| |  ||||||||| |||| ||||  |||||||| |||||||||||||||
Sbjct: 619 atattgcctagcgggcaaaataatcccccgccttcggtatccagcttcagtcaactgggc 678

                       
Query: 190 ccgtcacttaat 201
            | |||||||||
Sbjct: 679 gcatcacttaat 690