Jatropha Genome Database

JcCB0285631.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0285631.20 - phase: 1 /pseudo/partial
         (272 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29999.m000207 RNA binding protein, putative                            96   1e-19

>29999.m000207 RNA binding protein, putative
          Length = 435

 Score = 95.6 bits (48), Expect = 1e-19
 Identities = 63/68 (92%)
 Strand = Plus / Plus

                                                                       
Query: 44  ggcctttcaagactaacaacagatgagaagctaaaagaggcattttctccttttggccag 103
           ||||| || ||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 124 ggcctctcgagactaacaacagatgagaagcttaaagaggcattttctccctttggccag 183

                   
Query: 104 ctcgttga 111
           || |||||
Sbjct: 184 cttgttga 191



 Score = 79.8 bits (40), Expect = 8e-15
 Identities = 76/88 (86%)
 Strand = Plus / Plus

                                                                       
Query: 114 gctgaaaaagccagagaaaacatgaatgccaaatacttggacggatgggtaatttttgtt 173
           ||||| ||||||||||||   |||||||||||||  ||||| |||||||| || ||||| 
Sbjct: 268 gctgagaaagccagagaaggaatgaatgccaaatttttggatggatgggtgatctttgtc 327

                                       
Query: 174 gaccctgcaaagccaagggagcagagac 201
           |||||||| ||||||||||| |||||||
Sbjct: 328 gaccctgccaagccaagggaacagagac 355