Jatropha Genome Database

JcCB0284961.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0284961.10 + phase: 0 /pseudo/partial
         (567 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30131.m006860 conserved hypothetical protein                          276   1e-73

>30131.m006860 conserved hypothetical protein
          Length = 966

 Score =  276 bits (139), Expect = 1e-73
 Identities = 184/199 (92%)
 Strand = Plus / Plus

                                                                       
Query: 83  agaaagcagccgaggcacatctccctgtccttgagtccaaagaggggatttttattagca 142
           |||||||||| || ||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 452 agaaagcagctgaagcacatctccctgtccttgagtcgaaagaagggatttttattagca 511

                                                                       
Query: 143 tggatgacttggatggtctgcatgtttggagcttcaaatacaggtactggcctaataaca 202
           |||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||
Sbjct: 512 tggatgacttggatggcctacatgtttggagcttcaaatacaggtattggcctaataaca 571

                                                                       
Query: 203 atagtcggatgtatgtacttgaaaacacaggcgactttgttaacacacatggattacaac 262
           |||| || ||||||||||||||||| || || ||||||||||| ||||| || |||||||
Sbjct: 572 atagccgaatgtatgtacttgaaaataccggggactttgttaatacacacggtttacaac 631

                              
Query: 263 taggagattttattatggt 281
           |||||||||||||||||||
Sbjct: 632 taggagattttattatggt 650



 Score =  157 bits (79), Expect = 9e-38
 Identities = 222/269 (82%), Gaps = 3/269 (1%)
 Strand = Plus / Plus

                                                                       
Query: 283 attcaggctaggaaggcgtcggatgaagatgtatatgctaacatagccatgactgcggtc 342
           ||||| |||| |||||| || |||||||||||||||||||| ||||| | |||||| |||
Sbjct: 682 attcaagctaagaaggcctccgatgaagatgtatatgctaatatagctaggactgcagtc 741

                                                                       
Query: 343 aacgacatatttcttcatgattatgaggttaataaatcaagctccttttatatgaactat 402
           || || ||  ||||| | ||||  ||| | || ||||||||||||||||| ||||| |||
Sbjct: 742 aatgatatcgttctttacgattgcgagatcaacaaatcaagctccttttacatgaattat 801

                                                                       
Query: 403 cctatggtggataataccggcttgtcatttatctacgacacaaccaccatcatctctaat 462
           || || ||||| |||||||||||||||||||||||||||   ||||||| | ||||| | 
Sbjct: 802 ccgatagtggacaataccggcttgtcatttatctacgac---accaccaccttctctgac 858

                                                                       
Query: 463 gactcaccacttgattttttgggtggatcgttaactaattattcgagaattgggcaaatg 522
           |||||||| |||||||||||||| |||||  | ||||| ||||| || |||||||| | |
Sbjct: 859 gactcaccgcttgattttttgggcggatctctgactaactattcaaggattgggcatagg 918

                                        
Query: 523 gaaaactttggatcggtcgagaacttgtc 551
           ||||  || ||| | ||||||| ||||||
Sbjct: 919 gaaactttcggacctgtcgagagcttgtc 947