Jatropha Genome Database

JcCB0281811.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0281811.20 + phase: 0 
         (357 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

27395.m000082 hydrogen-transporting ATP synthase, rotational mec...   145   2e-34
29912.m005404 hydrogen-transporting ATP synthase, rotational mec...    68   4e-11

>27395.m000082 hydrogen-transporting ATP synthase, rotational
           mechanism, putative
          Length = 357

 Score =  145 bits (73), Expect = 2e-34
 Identities = 283/353 (80%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggcatcaaagctgcctcagttgcaatctaagttacattctgcagccaagcatggatgt 60
           |||||||||||||||||||| ||||||   |||  |  ||||| ||||||| |||||  |
Sbjct: 1   atggcatcaaagctgcctcaattgcaaggcaaggcaagttctgtagccaagaatggactt 60

                                                                       
Query: 61  gctttctacaagcagttgttggaggaaaacaagcaatatatccagaacccacccactgtg 120
           ||||||||||||||| |||||||  |||||||||| | | | ||| | ||||| || || 
Sbjct: 61  gctttctacaagcagctgttggaacaaaacaagcattttgttcaggatccaccaacagtt 120

                                                                       
Query: 121 gagagatgccaattactagccaatcagctacttttcactcgtcttgccagtattcccaat 180
            ||||||||||||| ||  | ||||| || |||| |||||| |||||||||||||| | |
Sbjct: 121 aagagatgccaattgctgtcaaatcaactgctttacactcgccttgccagtattccaagt 180

                                                                       
Query: 181 cgatatgaagcattctggaaggaacttgagggtctcaagaacctaatgaaaagcaagcca 240
           || |  |||||||||||||||||| |||    ||| ||||| ||||||||   ||||| |
Sbjct: 181 cgctgcgaagcattctggaaggaagttggctctctaaagaatctaatgaaggacaagcaa 240

                                                                       
Query: 241 gagatgaatatagagaaggctggtcttgttgctctgtttggagtggagtgctttgcttgg 300
           ||| | |||| |||||| ||||| ||  ||||| | |||||| | |||||||| ||||||
Sbjct: 241 gagttcaataaagagaatgctgggctgattgctttatttggactagagtgcttcgcttgg 300

                                                                
Query: 301 ttttggggtggtgaaataattgggagaggctttacatttactggttactatgt 353
           ||||  || |||||||| ||||| |||||||||||   |||||||||| ||||
Sbjct: 301 ttttatggcggtgaaatcattggaagaggctttacgcatactggttaccatgt 353


>29912.m005404 hydrogen-transporting ATP synthase, rotational
           mechanism, putative
          Length = 369

 Score = 67.9 bits (34), Expect = 4e-11
 Identities = 46/50 (92%)
 Strand = Plus / Plus

                                                             
Query: 160 cgtcttgccagtattcccaatcgatatgaagcattctggaaggaacttga 209
           |||||||| ||||||||| ||||| ||||| |||||||||||||||||||
Sbjct: 172 cgtcttgcaagtattccccatcgaaatgaatcattctggaaggaacttga 221