Jatropha Genome Database
- JcCB0268911.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0268911.10 + phase: 0 /pseudo
(1389 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29929.m004563 Trichohyalin, putative 218 7e-56
>29929.m004563 Trichohyalin, putative
Length = 1923
Score = 218 bits (110), Expect = 7e-56
Identities = 274/329 (83%), Gaps = 6/329 (1%)
Strand = Plus / Plus
Query: 980 agaggaaggaagaggtgaaacatttgaagaatttgaaaaagcaggaaatgaaggagaagt 1039
|||| |||| |||| |||| ||||||||||||||||||||| |||||||||| || ||||
Sbjct: 953 agagaaaggcagagttgaagcatttgaagaatttgaaaaagaaggaaatgaatgaaaagt 1012
Query: 1040 tgatgaaggttatggaggctgcaggtataagggatgataatgattttgtgttagatttga 1099
||| ||||||||| ||||||| ||| | | ||||||||||||||||| || ||||||
Sbjct: 1013 tgagcaaggttatgcaggctgctggtgtcacggatgataatgattttgctttggatttgg 1072
Query: 1100 atgatttagaagaggattttgatccttcagagtatgataaactgatgaagaaggcttttg 1159
|||||||| | ||||||||||||| |||||||||||| ||||||| |||||||||
Sbjct: 1073 atgatttaaagaaggattttgatccagaagagtatgataagatgatgaaaaaggctttta 1132
Query: 1160 gcgaggagtattataatgcagacgatgtggatccaggatttggtagcaataatgatgatg 1219
|| || |||||||||||||| ||| | ||||| | ||||||||| | ||||||||||
Sbjct: 1133 atgaagactattataatgcagatgatttagatccggaatttggtagtgaaaatgatgatg 1192
Query: 1220 ataaagctgatgatgatgttgagaaaccagattttgataaggaggatgagttacttggac 1279
| || | |||| || ||||||||||||||||||||||||||||||||||||| |
Sbjct: 1193 a------tggggttgatattaagaaaccagattttgataaggaggatgagttacttggtc 1246
Query: 1280 ttcccaaaggatgggaggcagttgacaat 1308
|||| ||||| ||||| ||||||||||||
Sbjct: 1247 ttcctaaagggtgggatgcagttgacaat 1275
Score = 167 bits (84), Expect = 2e-40
Identities = 191/227 (84%), Gaps = 6/227 (2%)
Strand = Plus / Plus
Query: 679 gatgagaataataagtttttgaaggacttttttgagaaacaaatgtgggttgatagggga 738
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 658 gatgagaataataagtttttgaaggagtttattgagaaacaaatgtgggttgatagggat 717
Query: 739 agtgaggataggaggaggggctttgttgacgacgatgaagtggatgagttgttgagagat 798
| | ||||||| || | ||||| || |||||||| ||||| ||||| ||||||
Sbjct: 718 aataaggatagaagtgg------tgttgcagatgatgaagttgatgacttgttcagagat 771
Query: 799 gaggaggagattgagaaacaggagaagtatgaggagagttataattttaggtatgaggag 858
|| |||||||| |||| |||||||||||||||||||| ||||||||||||| |||| |||
Sbjct: 772 gatgaggagatcgagagacaggagaagtatgaggagacttataattttaggcatgaagag 831
Query: 859 aatgctggggatagagtgatgggtcattcgaggaaagtggagggatc 905
| || || ||||| || ||||||||||| |||| |||||| |||||
Sbjct: 832 agtgtaggagatagggttatgggtcattctaggatagtggaaggatc 878
Score = 71.9 bits (36), Expect = 1e-11
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 400 aagaagaaagctaagtacttgaaggatgtgatggcccagcaattgctagaggaagggcct 459
||||| |||||| ||||||||| ||||| | ||| ||||||||| ||||||||||||||
Sbjct: 379 aagaaaaaagctgtgtacttgaaagatgtaagggctcagcaattgatagaggaagggcct 438
Query: 460 gaatttga 467
||||||||
Sbjct: 439 gaatttga 446
Score = 69.9 bits (35), Expect = 4e-11
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 100 cacaacaagaagcgcgaagctctccaaaggtatgaagagctcaaaaagaaaggccaaatc 159
|||||||| |||||||| | | | ||||| || |||||||| |||||||||||||||||
Sbjct: 91 cacaacaaaaagcgcgaggatttacaaagatacgaagagctaaaaaagaaaggccaaatt 150
Query: 160 gaagattcgga 170
|||||||||||
Sbjct: 151 gaagattcgga 161