Jatropha Genome Database

JcCB0267821.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0267821.10 + phase: 1 /pseudo/partial
         (445 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29623.m000322 hypothetical protein                                    109   1e-23
30122.m000341 transcription factor, putative                           62   3e-09
29812.m000200 transcription factor, putative                           56   2e-07

>29623.m000322 hypothetical protein
          Length = 2856

 Score =  109 bits (55), Expect = 1e-23
 Identities = 183/221 (82%), Gaps = 5/221 (2%)
 Strand = Plus / Plus

                                                                        
Query: 171  tttagagttaaagccaaactttngngagaagacaaaagtgagattcagcttgcaacccag 230
            |||||||||||||||||  ||| | ||||||||||| ||  | |||||||||||||| | 
Sbjct: 2554 tttagagttaaagccaa--tttcg-gagaagacaaa-gtccgtttcagcttgcaaccaaa 2609

                                                                        
Query: 231  ttggagcttacaaggacttgcaacaggaactggcaaaacgtttcaatagaaatgatatat 290
            |||| | || |||||||||||||||||| || ||||| |||||   || | ||||   ||
Sbjct: 2610 ttgg-gatttcaaggacttgcaacaggagcttgcaaagcgttttggtatacatgaaggat 2668

                                                                        
Query: 291  gcagaactgatttaaagtatttagatgatgatcaggaatgggttcttttgacttgtgatg 350
            ||||||||||| | |||||| | |||||||| || || |||||||| ||||| |||||||
Sbjct: 2669 gcagaactgatctcaagtatctggatgatgaccatgagtgggttctgttgacatgtgatg 2728

                                                     
Query: 351  atgatcttgaggagtgtaaagacatatacagattgtctcag 391
             ||| || |||||||||||||||||||||||  ||||||||
Sbjct: 2729 ctgacctagaggagtgtaaagacatatacagggtgtctcag 2769


>30122.m000341 transcription factor, putative
          Length = 2724

 Score = 61.9 bits (31), Expect = 3e-09
 Identities = 61/71 (85%)
 Strand = Plus / Plus

                                                                        
Query: 305  aagtatttagatgatgatcaggaatgggttcttttgacttgtgatgatgatcttgaggag 364
            |||||||| |||||||||   || ||||||| |||||  ||||||| |||||||||||||
Sbjct: 2557 aagtatttggatgatgatggcgagtgggttcgtttgaactgtgatgctgatcttgaggag 2616

                       
Query: 365  tgtaaagacat 375
            || ||||||||
Sbjct: 2617 tgcaaagacat 2627


>29812.m000200 transcription factor, putative
          Length = 2709

 Score = 56.0 bits (28), Expect = 2e-07
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                
Query: 338  ttgacttgtgatgatgatcttgaggagtgtaaagac 373
            ||||||||||||| ||||||||||||||||| ||||
Sbjct: 2572 ttgacttgtgatgctgatcttgaggagtgtatagac 2607