Jatropha Genome Database

JcCB0265081.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0265081.10 + phase: 2 /partial
         (694 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29646.m001074 DNA-directed RNA polymerase, putative                   167   1e-40

>29646.m001074 DNA-directed RNA polymerase, putative
          Length = 2034

 Score =  167 bits (84), Expect = 1e-40
 Identities = 144/164 (87%)
 Strand = Plus / Plus

                                                                        
Query: 35   aagaaattgcttatagaggggcctccagttcaaaggtttagtgttcttaagcactttgct 94
            ||||||||| || ||||||||||||| |||||| ||||||||||||||||||||||||| 
Sbjct: 1018 aagaaattgattttagaggggcctccggttcaacggtttagtgttcttaagcactttgcg 1077

                                                                        
Query: 95   ccagaggacactgttgaagatgtcttaacagttgttcagaagcatggacaattagtgcag 154
            ||||| |||| ||||||||||||||||| |||| ||||| |  | || ||||| ||||||
Sbjct: 1078 ccagatgacagtgttgaagatgtcttaaaagttcttcaggaatacgggcaattggtgcag 1137

                                                        
Query: 155  ggactttgggctccaaggactgctttgctgtttccagattcaaa 198
            || ||||||||||||| || | ||||||||||||||||| ||||
Sbjct: 1138 gggctttgggctccaaagagttctttgctgtttccagatgcaaa 1181



 Score = 91.7 bits (46), Expect = 5e-18
 Identities = 70/78 (89%)
 Strand = Plus / Plus

                                                                        
Query: 598  aacaactataacatctgaaagtcgagaagctttactaaaggtcctgccaaaagttcttca 657
            |||||||||||||  ||||| ||||||||||||||| |||| ||||||||||||| ||||
Sbjct: 1572 aacaactataacagttgaaactcgagaagctttactgaaggccctgccaaaagtttttca 1631

                              
Query: 658  aactcacaaggtttgcag 675
            || |||||| ||||||||
Sbjct: 1632 aagtcacaaagtttgcag 1649



 Score = 85.7 bits (43), Expect = 3e-16
 Identities = 88/103 (85%)
 Strand = Plus / Plus

                                                                        
Query: 323  aatttgtttgctgttgaaaggccttccttcagggattggaagtttaaagagtcaccagat 382
            |||||||||||||| |||||||||||||| | |||||||||||||||||||    |||||
Sbjct: 1297 aatttgtttgctgtcgaaaggccttcctttaaggattggaagtttaaagagcatacagat 1356

                                                       
Query: 383  gcagcatttatgaaactccaccctgaagttgttaaaaagcaag 425
             || ||||||| || ||| |||| ||  |||||||||||||||
Sbjct: 1357 acaacatttataaagctctacccagatattgttaaaaagcaag 1399