Jatropha Genome Database

JcCB0263871.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0263871.10 + phase: 0 
         (645 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29680.m001678 Ethylene-responsive transcription factor 1B, putative   214   5e-55

>29680.m001678 Ethylene-responsive transcription factor 1B, putative
          Length = 675

 Score =  214 bits (108), Expect = 5e-55
 Identities = 204/236 (86%)
 Strand = Plus / Plus

                                                                       
Query: 235 gaaattgcttatcgaggagtaagaaagcggccttgggggaaatatgcggcggaaatcaga 294
           |||||||||||| |||| || |||||||| || ||||| ||||| || ||||| || |||
Sbjct: 265 gaaattgcttatagaggtgttagaaagcgaccgtggggcaaatacgcagcggagataaga 324

                                                                       
Query: 295 gattcgacgagaaatggagttagagtttggttaggaacatttgataaagctgaggatgca 354
           ||||||||||||||||| || ||||| ||| ||||||||||||||| |||||| | ||||
Sbjct: 325 gattcgacgagaaatggggtaagagtgtggctaggaacatttgatacagctgaagctgca 384

                                                                       
Query: 355 gccttagcttatgatcaagctgcattagcaatgagaggttcaacggctatattgaatttt 414
           || || || ||||||||||| ||||| |||||||||||||||| ||||||| | ||||||
Sbjct: 385 gctttggcctatgatcaagccgcatttgcaatgagaggttcaatggctatacttaatttt 444

                                                                   
Query: 415 cccattgagaaagtttatgaatcacttcaagaaatgaagtatgaattccaggaagg 470
           || || || |||||||| || ||||||||||||||||| ||||||||| |||||||
Sbjct: 445 cctatggaaaaagtttacgagtcacttcaagaaatgaactatgaattcaaggaagg 500



 Score = 65.9 bits (33), Expect = 3e-10
 Identities = 48/53 (90%)
 Strand = Plus / Plus

                                                                
Query: 571 gtggtgttggaagatttaggtgctgagtacttggaagagcttctaaccatctc 623
           ||||| ||||||||||| || ||||| ||| ||||||||||||||||||||||
Sbjct: 601 gtggtcttggaagatttgggagctgactacctggaagagcttctaaccatctc 653