Jatropha Genome Database
- JcCB0259591.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0259591.20 - phase: 0
(1338 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29942.m000745 geranylgeranyl hydrogenase, putative 470 e-131
29844.m003249 conserved hypothetical protein 64 2e-09
30138.m004068 geranylgeranyl hydrogenase, putative 54 2e-06
>29942.m000745 geranylgeranyl hydrogenase, putative
Length = 1356
Score = 470 bits (237), Expect = e-131
Identities = 660/801 (82%)
Strand = Plus / Plus
Query: 538 ctagccgtcgatgtaatcatcggagcagacggagccaacagcaaagtagccaaatcgata 597
||||| ||||||||| ||||||| || |||||||| |||||| |||||||| || |||
Sbjct: 556 ctagcggtcgatgtagtcatcggcgctgacggagctaacagccgtgtagccaagtcaata 615
Query: 598 aacgccggaaattacacttgtgccattgcatttcaagagagaatcagactccccgacgag 657
||||| ||||| |||| ||| |||||||| || ||||| ||||||||| | || || ||
Sbjct: 616 aacgctggaaactacagttgcgccattgctttccaagaaagaatcagattacctgatgac 675
Query: 658 aaaatggagtactatcaaaatctcgcggagatgtacgtcggcgatgacgtgtcacccgat 717
|||||||||||||| || | || || |||||||| || ||||||||||| |||||||||
Sbjct: 676 aaaatggagtactacaaagacctagccgagatgtatgtgggcgatgacgtctcacccgat 735
Query: 718 ttttacgcgtgggtatttcctaaatgcgaccacgtggcagtaggaactggtacagtttgc 777
|||||||||||||| ||||| |||||||||||||| ||||| || ||||| || || ||
Sbjct: 736 ttttacgcgtgggtgtttccgaaatgcgaccacgtagcagtgggtactggcactgtatgt 795
Query: 778 gcaaaaccggacattaaactataccaaaagggaattagagaaagagtaagacaaaagata 837
|||| | ||||||| | | ||||| || || ||||||| |||||| | || ||
Sbjct: 796 tcaaagcaaaacattaaggttttccaaagaggcatacgagaaagggtaagagacaaaatc 855
Query: 838 aacggtggaaaggtgatcaaggtggaagcgcatccaataccggagcacccacgtcctgtg 897
|| ||||| || ||||| || || || || || ||||||||||||||||| |||||
Sbjct: 856 aagggtggtaaagtgattaaagtagaggcccacccaataccggagcacccgcgtccgacc 915
Query: 898 agagtacgaggacgggtggcactggtgggagacgcggcggggtacgtgacgaagtgctcc 957
| ||| ||||||||||||| |||||||| || || || ||||| ||||| |||||||||
Sbjct: 916 cgggtaagaggacgggtggcgctggtgggggatgcagctgggtatgtgaccaagtgctcc 975
Query: 958 ggcgaagggatatattttgcggcgaaatcaggaagaatgtgcggcgaggcgatagtgaaa 1017
|| |||||||||||||||||||| || || || || |||||||| |||| ||||||||
Sbjct: 976 ggagaagggatatattttgcggcaaagtccgggaggatgtgcggggagggtatagtgaag 1035
Query: 1018 gcatcagaaggaggagagaaaagggtgaaagaggaagatttgaaaagagggtatttgaaa 1077
|| || |||||||||||||| | ||||| |||||||| ||||| || | |||||||| |
Sbjct: 1036 gcgtctgaaggaggagagaagatggtgagtgaggaagacttgaagagggagtatttgaga 1095
Query: 1078 gagtgggataagaaatattacagtacttttaggtttttggatttgttgcagagggttttc 1137
|| |||||||| || ||| | ||| ||||||||||||||||||||||| || || ||
Sbjct: 1096 gaatgggataacaagtatgtgaatacatttaggtttttggatttgttgcaaagagtgttt 1155
Query: 1138 tatggctctaatatggctagagaagcattggttgagctttgtggagatgagtatgtgcag 1197
||||| |||| ||| |||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 1156 tatgggagtaatgtgggtagagaggcattggttgagctatgtggagatgagtatgtgcaa 1215
Query: 1198 agaatgacatttgatagctatttgtataagaaattggctaatggggatagatgggaagat 1257
||||||||||||||||| |||||||||||||| ||||| ||| ||||||||||| |||
Sbjct: 1216 agaatgacatttgatagttatttgtataagaagttggccggtggagatagatgggaggat 1275
Query: 1258 gtgaaaatgggtttgaatactattgggagtttggttaggtgtaggattcttggtagggag 1317
||||| |||| |||||||||| |||||||| |||||||||| |||||| | || ||||||
Sbjct: 1276 gtgaagatggttttgaatacttttgggagtctggttaggtgcaggattgtgggcagggag 1335
Query: 1318 atggaggctttgaaagtttag 1338
||||||| |||||| ||||||
Sbjct: 1336 atggagggtttgaaggtttag 1356
Score = 242 bits (122), Expect = 5e-63
Identities = 278/330 (84%)
Strand = Plus / Plus
Query: 112 aagctacgcgccgctgtgatcggaggcggtccagctggctcttcagctgcagaatcactt 171
||||||||||| ||||| |||||||||||||||||||| || || || |||||| |||||
Sbjct: 127 aagctacgcgctgctgtcatcggaggcggtccagctggttcctccgccgcagaagcactt 186
Query: 172 gctgccggtggaatcgaaactttcctcttcgagagaagcacttccactgccaagccatgc 231
||||| || ||||||||||| ||||||||||| | ||||| ||||| ||||| || |||
Sbjct: 187 gctgctggaggaatcgaaacattcctcttcgaacgcagcacctccacggccaaaccttgc 246
Query: 232 ggcggcgccattcctctttgcatgatagacgagttctctatccctctccacctcatcgac 291
||||| ||||||||||| |||||| ||||||| ||| ||||||||| |||||||||||
Sbjct: 247 ggcggagccattcctctctgcatgttagacgaattcaacatccctctcaacctcatcgac 306
Query: 292 cgtcacgtcactcggatgaaaatcatctctccgtctaatctcactgtcgattttggctcc 351
|| || ||||| || ||||| ||| | ||||| || |||||||| || |||||||| |||
Sbjct: 307 cgccatgtcacccgtatgaagatcgtttctccttccaatctcacagttgattttggttcc 366
Query: 352 aaaactctcaagcctcacgaatccatccccatgctccgccgcgaagtactggactccttc 411
|||||| | |||||||| ||||| ||||||||||||||||| ||||| || || |||||
Sbjct: 367 aaaactttgaagcctcatgaatctatccccatgctccgccgtgaagttctcgattccttt 426
Query: 412 ctccggtcccgcgcccaatccaacggcgct 441
|| || || |||| |||||||| ||||||
Sbjct: 427 ctgcgatcacgcgtacaatccaaaggcgct 456
>29844.m003249 conserved hypothetical protein
Length = 252
Score = 63.9 bits (32), Expect = 2e-09
Identities = 86/104 (82%)
Strand = Plus / Minus
Query: 160 gcagaatcacttgctgccggtggaatcgaaactttcctcttcgagagaagcacttccact 219
|||||| |||||||||| | |||||| |||| ||||||||||| ||||||||||||
Sbjct: 176 gcagaagcacttgctgcttgcggaatcaaaacgttcctcttcgaactaagcacttccacg 117
Query: 220 gccaagccatgcggcggcgccattcctctttgcatgatagacga 263
||||| | ||||| || | ||||||||| |||||| |||||||
Sbjct: 116 gccaaatcttgcgggggagacattcctctctgcatgttagacga 73
>30138.m004068 geranylgeranyl hydrogenase, putative
Length = 1398
Score = 54.0 bits (27), Expect = 2e-06
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 1186 gagtatgtgcagagaatgacatttgatagctatttgtataaga 1228
||||||||||||| ||||| ||||||||||||||||| ||||
Sbjct: 1246 gagtatgtgcagaagatgacttttgatagctatttgtacaaga 1288