Jatropha Genome Database

JcCB0252341.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0252341.10 + phase: 1 /partial
         (302 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

27613.m000623 40S ribosomal protein S8, putative                      311   1e-84
29447.m000031 40S ribosomal protein S8, putative                      103   6e-22

>27613.m000623 40S ribosomal protein S8, putative
          Length = 660

 Score =  311 bits (157), Expect = 1e-84
 Identities = 226/249 (90%)
 Strand = Plus / Plus

                                                                       
Query: 54  gaaggtgaaggtgctactgaggaagtgaagaagagtaatcatgttttgagaaagctggag 113
           |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 409 gaaggtgaagctgctactgaggaagtgaagaagagcaatcatgttttgagaaagctggag 468

                                                                       
Query: 114 aagagacagcagactcgcaagcttgatcctcatattgaagaacaatttgctggtggtcgt 173
           |||||||| ||||  ||||||||||| || ||||||||||||||||||| |||||| |||
Sbjct: 469 aagagacaacagatccgcaagcttgacccacatattgaagaacaatttggtggtggccgt 528

                                                                       
Query: 174 ctaatggcttgtatctcatcacgccctggtcagtgtggccgtgctgatgggtatattctg 233
           ||  | ||||| |||||||||||||| |||||||| ||||||||||||||||| ||| ||
Sbjct: 529 ctgctagcttgcatctcatcacgccccggtcagtgcggccgtgctgatgggtacattttg 588

                                                                       
Query: 234 gagggtaaggagctggagttctacatgaagaagatccagaggaagaagggcaagggagct 293
           ||||| || ||||||||||| |||||||||||| |||||||||||||||| |||||||||
Sbjct: 589 gagggcaaagagctggagttttacatgaagaagctccagaggaagaagggaaagggagct 648

                    
Query: 294 ggggctgcc 302
           || ||||||
Sbjct: 649 ggtgctgcc 657


>29447.m000031 40S ribosomal protein S8, putative
          Length = 666

 Score =  103 bits (52), Expect = 6e-22
 Identities = 100/116 (86%)
 Strand = Plus / Plus

                                                                       
Query: 186 atctcatcacgccctggtcagtgtggccgtgctgatgggtatattctggagggtaaggag 245
           |||||||| || |||||||| |||||| | ||||| ||||| ||  ||||||||||||| 
Sbjct: 547 atctcatcccgtcctggtcaatgtggcagagctgacgggtacatattggagggtaaggaa 606

                                                                   
Query: 246 ctggagttctacatgaagaagatccagaggaagaagggcaagggagctggggctgc 301
           || |||||||| ||||||||| |||| ||||||||||||||||| ||||| |||||
Sbjct: 607 cttgagttctatatgaagaagctccaaaggaagaagggcaagggtgctggagctgc 662