Jatropha Genome Database

JcCB0244421.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0244421.10 + phase: 0 
         (678 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29584.m000234 Ethylene-responsive transcription factor 1B, putative   115   4e-25
29680.m001678 Ethylene-responsive transcription factor 1B, putative    74   1e-12
29895.m000321 Ethylene-responsive transcription factor 1B, putative    56   3e-07

>29584.m000234 Ethylene-responsive transcription factor 1B, putative
          Length = 676

 Score =  115 bits (58), Expect = 4e-25
 Identities = 169/206 (82%)
 Strand = Plus / Plus

                                                                       
Query: 280 tggggaaagtacgccgccgaaataagagattcgaccagaaatggtatcagagtttggtta 339
           ||||| |||||||| || || || |||||||||||  ||||||| || || |||||| | 
Sbjct: 313 tgggggaagtacgcagcagagattagagattcgacacgaaatggaataagggtttggctt 372

                                                                       
Query: 340 ggaacttttgatagcgcagaggcggcagctttagcttatgatcaagcagcattttccatg 399
           ||||| || || |||||||| || || |||||||||||||| ||||| |||||||| |||
Sbjct: 373 ggaacattcgacagcgcagaagcagcggctttagcttatgaccaagctgcattttcgatg 432

                                                                       
Query: 400 cgtggttcgatggccatactgaactttccggtggaagtagtaagagaatcgcttcaagat 459
           || ||||| ||||||||||| || || || |||||  | |||||||||||| | ||||| 
Sbjct: 433 cgaggttcaatggccatactcaatttccctgtggagatggtaagagaatcgatgcaagaa 492

                                     
Query: 460 atcaaataccggtttgaagatgggtg 485
           ||||| ||||| | ||| ||||||||
Sbjct: 493 atcaagtaccgatgtgaggatgggtg 518



 Score = 61.9 bits (31), Expect = 5e-09
 Identities = 43/47 (91%)
 Strand = Plus / Plus

                                                          
Query: 601 ttggaagatttaggagcagaatatttagaggagctattgagttcatc 647
           ||||| |||||||||||||| |||||||||||||| ||||| |||||
Sbjct: 628 ttggaggatttaggagcagagtatttagaggagcttttgagctcatc 674


>29680.m001678 Ethylene-responsive transcription factor 1B, putative
          Length = 675

 Score = 73.8 bits (37), Expect = 1e-12
 Identities = 121/149 (81%)
 Strand = Plus / Plus

                                                                       
Query: 280 tggggaaagtacgccgccgaaataagagattcgaccagaaatggtatcagagtttggtta 339
           ||||| || ||||| || || |||||||||||||| ||||||||  | ||||| ||| ||
Sbjct: 298 tggggcaaatacgcagcggagataagagattcgacgagaaatggggtaagagtgtggcta 357

                                                                       
Query: 340 ggaacttttgatagcgcagaggcggcagctttagcttatgatcaagcagcattttccatg 399
           ||||| |||||||  || || || |||||||| || ||||||||||| |||||| | |||
Sbjct: 358 ggaacatttgatacagctgaagctgcagctttggcctatgatcaagccgcatttgcaatg 417

                                        
Query: 400 cgtggttcgatggccatactgaactttcc 428
            | ||||| ||||| ||||| || |||||
Sbjct: 418 agaggttcaatggctatacttaattttcc 446


>29895.m000321 Ethylene-responsive transcription factor 1B, putative
          Length = 675

 Score = 56.0 bits (28), Expect = 3e-07
 Identities = 58/68 (85%)
 Strand = Plus / Plus

                                                                       
Query: 334 tggttaggaacttttgatagcgcagaggcggcagctttagcttatgatcaagcagcattt 393
           |||||||| || |||||||| |||||||| || ||| | |||||||||||||| || |||
Sbjct: 331 tggttagggacatttgatagtgcagaggcagctgctctggcttatgatcaagctgctttt 390

                   
Query: 394 tccatgcg 401
           || |||||
Sbjct: 391 tcgatgcg 398