Jatropha Genome Database

JcCB0242781.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0242781.20 + phase: 0 /partial
         (510 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29842.m003529 26S protease regulatory subunit, putative               258   3e-68

>29842.m003529 26S protease regulatory subunit, putative
          Length = 1764

 Score =  258 bits (130), Expect = 3e-68
 Identities = 400/488 (81%), Gaps = 9/488 (1%)
 Strand = Plus / Plus

                                                                       
Query: 7   caagtagcttatgcggattctgatcaggctgcttctaagcctacattgtccccagactct 66
           |||||||| ||||| || ||||||||||||||| |||| ||| || || |  |||| |||
Sbjct: 217 caagtagcctatgctgactctgatcaggctgctgctaaaccttcactgccttcagaatct 276

                                                                       
Query: 67  ccttcaagttatcaggacctagaggagattgccaagaaagaaagacaacgaattgaagaa 126
           |||||||||||  ||||  |||||||||||||||  ||||||||||| ||||||||||  
Sbjct: 277 ccttcaagttacaaggatttagaggagattgccacaaaagaaagacagcgaattgaaggg 336

                                                                       
Query: 127 ttgcttagaagtaaagggatgaaatatggttcttatccccggttcactgttgctcttaag 186
           || || |     | ||| || ||| |||||||||| ||||| ||||  |||||| | |||
Sbjct: 337 ttactcaagttgagaggaataaaaaatggttcttacccccgcttcatggttgctgtcaag 396

                                                                       
Query: 187 ggtcaaaaggtcacaatcaagtttcaaattcctcctgcatgtgatgttccgcagttgatt 246
           |||||||||||||||||||| |||||||| |||||||||||||||| ||  || ||||||
Sbjct: 397 ggtcaaaaggtcacaatcaaatttcaaatacctcctgcatgtgatgctcttcacttgatt 456

                                                                       
Query: 247 gcaaaccttgctatgaatcttggactgaaggttgatgagcgtggcggtggttcagacatg 306
           || ||||| | |   ||||||||| |||||||||| ||||| |  ||||||||||| |||
Sbjct: 457 gccaacctggtttcaaatcttggattgaaggttgacgagcgcgctggtggttcagatatg 516

                                                                       
Query: 307 cgtttacgtgcttgggacagtgcagttgcctggcaattaacacttagttgtccagaaaaa 366
           |  ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| 
Sbjct: 517 ctattacgtgcttgggacagtgcagttgcctggcaactaacacttagttctccagaaaag 576

                                                                       
Query: 367 cagaaggaatctcatgggga-taacagcagttt-------tgcaga-acctgagggagat 417
           || |||||| ||  ||  ||  ||  |||||||       || | | | |||||||||||
Sbjct: 577 cataaggaagctggtgttgacaaagggcagtttgtagatatgaatacagctgagggagat 636

                                                                       
Query: 418 ctgtgtattctcttatttcgttcgctcattagcagagataaagcagaaattgagtttata 477
           || || ||| |||| |||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 637 ctatgcattttcttgtttcgttcactcattagcacagataaagcagaaattgagtttata 696

                   
Query: 478 aagagtgg 485
           ||| ||||
Sbjct: 697 aagggtgg 704