Jatropha Genome Database

JcCB0240171.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0240171.10 + phase: 0 /partial
         (724 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29889.m003351 r2r3-myb transcription factor, putative                 147   1e-34
30076.m004607 r2r3-myb transcription factor, putative                 117   1e-25
29889.m003350 conserved hypothetical protein                           56   3e-07

>29889.m003351 r2r3-myb transcription factor, putative
          Length = 252

 Score =  147 bits (74), Expect = 1e-34
 Identities = 133/152 (87%), Gaps = 3/152 (1%)
 Strand = Plus / Plus

                                                                       
Query: 51  ctcctcttccaccaccaccggcacccaaagtgaagaggagatgggg---gacttaagaag 107
           |||||| ||||||||||||| ||| ||||||||||| ||||||  |   || ||| | ||
Sbjct: 42  ctcctcctccaccaccaccgccactcaaagtgaagatgagatgatgagcgagttacggag 101

                                                                       
Query: 108 agggccatggactgttgaagaagactttaagctcatcaattacattactactcatggaga 167
           ||| |||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 102 aggtccatggacggttgaagaagactttaagctcatcaattacattgctactcaaggaga 161

                                           
Query: 168 gggtcgctggaactctcttgctcgctgtgcag 199
            ||||||||||||||||| ||||||| |||||
Sbjct: 162 aggtcgctggaactctctcgctcgctctgcag 193


>30076.m004607 r2r3-myb transcription factor, putative
          Length = 795

 Score =  117 bits (59), Expect = 1e-25
 Identities = 191/235 (81%)
 Strand = Plus / Plus

                                                                       
Query: 217 aaaagctgcagattaagatggctgaactatttaagacctgatgttcgacgtggaaatatc 276
           |||||||| ||||| |||||| | ||||| ||  |||| ||||||||||||||||| || 
Sbjct: 178 aaaagctgtagattgagatggttaaactacttgcgaccagatgttcgacgtggaaacata 237

                                                                       
Query: 277 actctggaagaacagctcatgatcctggagcttcattctcgatggggcaatcgatggtcc 336
           || ||  ||||||||||  |||| || || || |||||||| ||||||||  | ||||| 
Sbjct: 238 acccttcaagaacagctgttgattcttgaactccattctcgttggggcaacaggtggtca 297

                                                                       
Query: 337 aagattgcgcaacacttgccgggtagaactgacaatgagatcaagaattactggaggacg 396
           || || |||||  ||||||| || ||||| ||||||||||| ||||| ||||||||||| 
Sbjct: 298 aaaatagcgcagtacttgcctggaagaacagacaatgagataaagaactactggaggaca 357

                                                                  
Query: 397 cgcgtgcaaaagcatgcgaaacagcttaaatgtgacgtgaatagcaagcaattca 451
            | || |||||||| ||||| || || |||||||| || |||||||| |||||||
Sbjct: 358 agagtacaaaagcaagcgaagcaactcaaatgtgatgttaatagcaaacaattca 412


>29889.m003350 conserved hypothetical protein
          Length = 537

 Score = 56.0 bits (28), Expect = 3e-07
 Identities = 55/64 (85%)
 Strand = Plus / Plus

                                                                       
Query: 659 gttacactactcctgagagttctagtacggctgcctcatcggactcgtttgggacgcagg 718
           |||||||||| || ||||  |||||||| || || ||||||||||||||||| || ||||
Sbjct: 221 gttacactacgccagagacatctagtacagcagcatcatcggactcgtttggaacccagg 280

               
Query: 719 tttc 722
           ||||
Sbjct: 281 tttc 284