Jatropha Genome Database

JcCB0238051.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0238051.10 - phase: 1 /partial
         (545 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30174.m008793 conserved hypothetical protein                          256   1e-67

>30174.m008793 conserved hypothetical protein
          Length = 1443

 Score =  256 bits (129), Expect = 1e-67
 Identities = 240/277 (86%)
 Strand = Plus / Plus

                                                                       
Query: 188 aataacaagaacctcttcagatggcccatcccaaaataatagtgcgattgtaccatcaag 247
           |||||||| ||||||| |  |||||| ||| ||||||| || ||||||| ||||||| | 
Sbjct: 309 aataacaaaaacctctcccaatggcctatctcaaaatactaatgcgattataccatctaa 368

                                                                       
Query: 248 tcatagtgggcagaatggaatttccatttttcaaggactaattgagcgagcaaggaggac 307
           |  |||||| || |||||||| |||||||||||||| || |||||||||||| |||||||
Sbjct: 369 tactagtggtcaaaatggaatgtccatttttcaagggcttattgagcgagcacggaggac 428

                                                                       
Query: 308 tgttcgtggatctgctgatgatataggatggatgcaacgtgcttcaggaatgcctccagt 367
           |||||||||||||||||||||||||||||||||| |||||||||||    ||||| | ||
Sbjct: 429 tgttcgtggatctgctgatgatataggatggatggaacgtgcttcacagttgccttctgt 488

                                                                       
Query: 368 tgaggatggaacgggaaggtttatggaagtacttgataatataaggcatggtctgcacaa 427
           ||| |||||||| | ||| ||||||||| | |||||||| || ||||||||||| |||||
Sbjct: 489 tgaagatggaactgaaagatttatggaaattcttgataacatcaggcatggtctacacaa 548

                                                
Query: 428 gttgccaaattcaatggtctacttgttggttccaggt 464
           ||||||||||||| |||| ||||||||||||||||||
Sbjct: 549 gttgccaaattcagtggtttacttgttggttccaggt 585



 Score = 71.9 bits (36), Expect = 4e-12
 Identities = 107/130 (82%), Gaps = 3/130 (2%)
 Strand = Plus / Plus

                                                                       
Query: 19  attctgggaattc---tacacacgcacaggaattggtgacattttcttctgcacaaactg 75
           |||||||||||||   |||||| |||||||| ||||||| ||||||||||| ||||| ||
Sbjct: 149 attctgggaattcaactacacatgcacaggagttggtgatattttcttctggacaaagtg 208

                                                                       
Query: 76  aggaatttccggatggtgattgtgcatcttcacgtcaaaaccattcaacatttcctgaac 135
           || ||  || ||||| ||||||  |||| ||| ||||   ||||||||||||| ||| ||
Sbjct: 209 agcaacctctggatgatgattgcccatcctcaagtcatggccattcaacattttctgcac 268

                     
Query: 136 catctacatc 145
           |||| |||||
Sbjct: 269 catcaacatc 278