Jatropha Genome Database

JcCB0237541.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0237541.20 + phase: 0 /pseudo/partial
         (169 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29739.m003777 tpr repeat nuclear phosphoprotein, putative              90   5e-18

>29739.m003777 tpr repeat nuclear phosphoprotein, putative
          Length = 3198

 Score = 89.7 bits (45), Expect = 5e-18
 Identities = 96/113 (84%)
 Strand = Plus / Plus

                                                                       
Query: 1   aactcggaggaggaggtgagagtggctctcgatcagcttcctagagatgcctctgatatt 60
           ||||| |||||||| || || || || || |||||||||||| |||| || ||||| |||
Sbjct: 28  aactcagaggaggaagttagggtagcactggatcagcttcctcgagacgcttctgacatt 87

                                                                
Query: 61  ctcgacatcctcaaagccgagcaagctcctctggatctctggcttataattgc 113
           || || || || |||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 88  cttgatattcttaaagccgaacaagctcctctcgatctctggcttataattgc 140