Jatropha Genome Database

JcCB0236701.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0236701.10 - phase: 2 /partial
         (349 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30138.m003939 mads box protein, putative                              139   1e-32

>30138.m003939 mads box protein, putative
          Length = 735

 Score =  139 bits (70), Expect = 1e-32
 Identities = 154/182 (84%)
 Strand = Plus / Plus

                                                                       
Query: 11  atggggagaggtaggattcaactgaagcggatcgagaataagattagcagacaagtcact 70
           ||||||||||||||| |||| |||||| | || || || |||||||  || ||||| || 
Sbjct: 1   atggggagaggtagggttcagctgaagagaattgaaaacaagattaataggcaagtgacc 60

                                                                       
Query: 71  ttctctaaaagaagaactggtctgctgaagaaagctcatgagatctcagttctttgcgat 130
           || || ||||||||  ||||  || |||||||||| ||||||||||| ||||||||||||
Sbjct: 61  ttttcaaaaagaagggctggattgttgaagaaagcccatgagatctctgttctttgcgat 120

                                                                       
Query: 131 gctgaagttgctttaattgttttctctacaaaaggaaagctttttgagtactctactgat 190
           |||||||||||||| |||||||| ||||| ||||| || || ||||| ||||||||||||
Sbjct: 121 gctgaagttgctttgattgttttttctactaaagggaaactctttgaatactctactgat 180

             
Query: 191 tc 192
           ||
Sbjct: 181 tc 182