Jatropha Genome Database
- JcCB0236281.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0236281.10 + phase: 1 /pseudo/partial
(1178 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29929.m004516 chromatin assembly factor 1, subunit A, putative 325 3e-88
29645.m000077 conserved hypothetical protein 58 1e-07
>29929.m004516 chromatin assembly factor 1, subunit A, putative
Length = 2472
Score = 325 bits (164), Expect = 3e-88
Identities = 478/582 (82%), Gaps = 3/582 (0%)
Strand = Plus / Plus
Query: 504 aagcgattgcaggaggaggcagaaaaggatgaaaagcgccgcgaaaaagaagagtctgaa 563
||||||||||| |||||| ||||||||||||||||||| || |||| |||||||||||||
Sbjct: 838 aagcgattgcaagaggagacagaaaaggatgaaaagcgtcgtgaaagagaagagtctgaa 897
Query: 564 atgaggagacaactaaaaaagcagcaaaaggaagttgagaaagaacaacggcataaagag 623
| |||||| ||| ||| |||||||||| |||||| ||| || |||||||||| |||||||
Sbjct: 898 acgaggaggcaaataagaaagcagcaagaggaagctgaaaaggaacaacggcgtaaagag 957
Query: 624 aaggaagaagctaaaatgaaaaggcaaaatgctataaagaagcaagcttcaataatggaa 683
| ||||||||| || |||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 958 agagaagaagctgaactgaaaaggaaaaatgctataaagaaacaagcttcaataatggaa 1017
Query: 684 cgctttcttaaaagaagcaaaactgattccccatgccaaaatgagggaacttcaattgaa 743
||||||||||||||||||||| || |||| ||||||| |||||| | ||||||| | ||
Sbjct: 1018 cgctttcttaaaagaagcaaatctaattcaccatgcccaaatgatgagacttcaactaaa 1077
Query: 744 gaaaccgcacctgttttgtcaggcaagaagagtgagaagatgcctgaggcagttaccatg 803
| ||| | ||| || | ||||| |||| |||||| ||||||||||| || |
Sbjct: 1078 gcaacaacttctgattcggtgagcaagcagaggttgaagattcctgaggcagtcactctt 1137
Query: 804 gcaatggattgtactctgtcatcaaacgatgatattagaattgatgatattcgcaagctg 863
|| ||||| | |||||| |||||||| ||||||||| ||||||| |||| | ||| |
Sbjct: 1138 gctatggactttactctttcatcaaatgatgatattggaattgacaatatctggaagttt 1197
Query: 864 cacttatcttcttggcatcacctaggtcatgctattcgttcaaataggaagcagcattgg 923
||||| ||||| ||| ||| | |||| | ||| ||||| ||||| || || ||||||
Sbjct: 1198 cacttgtcttcctggtgtcatatgggtcgtagtatccgttcgaatagaaaacaacattgg 1257
Query: 924 agcattcgtcaaaagcctaagactgaattatttaaggaactcaagctaactactgccaga 983
||||| ||||| ||||||||||||||| ||||||||||||| ||||||||| | | |
Sbjct: 1258 agcatacgtcagaagcctaagactgaactatttaaggaacttaagctaactggtaaccgg 1317
Query: 984 gaactttctcacgatggtgagttgattgtagagaagcttgaaagtgaatggggggaacag 1043
|| ||| |||| |||| ||||| || ||||||||||||| ||||| || ||||||||
Sbjct: 1318 gatcttgctcatgatgatgagtcgagcgtagagaagcttgtaagtggat---gggaacag 1374
Query: 1044 tcttctgatgatagattatgtgcaacaaatttagagagttct 1085
|||||||||||||||| |||| || |||||||||||||||
Sbjct: 1375 tcttctgatgatagatcgtgtgtaatgaatttagagagttct 1416
Score = 192 bits (97), Expect = 3e-48
Identities = 352/438 (80%), Gaps = 8/438 (1%)
Strand = Plus / Plus
Query: 8 acggtggcggtggtgaagactgcggtgttgtttgtggggcagagaatgatgtacggagtg 67
||||||||| ||||||||| ||||||| ||||||| ||||||||| ||||||| ||||||
Sbjct: 334 acggtggcgctggtgaagagtgcggtgctgtttgtagggcagagagtgatgtatggagtg 393
Query: 68 cccaatgtcgatgctgatgttttggaagatgagagtcaggattgtctctggtgttgggag 127
|||||||||||||||||||||||||| ||| ||| || |||| ||||||||||||||||
Sbjct: 394 cccaatgtcgatgctgatgttttggaggatcagactcccgattctctctggtgttgggag 453
Query: 128 acaagagatctaaaggtgatgccaaaatacttgcgtggaactttaaaagttcggcggatc 187
|| |||||||||||| || |||| |||| ||||||| ||||| |||| || ||
Sbjct: 454 actagagatctaaagctgttgcctaaatctgtgcgtggtgaaataaaaattcgtcgtata 513
Query: 188 tgtcggaaaaagattcatgagagaatcagtgctgtgtctg--------tctgcattacaa 239
|||||||||||||| ||||||||||| |||||||| |||| ||||| |||||
Sbjct: 514 tgtcggaaaaagatccatgagagaattagtgctgtttctgcaatgttagctgcactacaa 573
Query: 240 aactcggagacttatcagagttgcagaactgatttaatgagagcatcaggaaagcttgct 299
|| || |||| | | |||||| || | |||||| |||| ||||||| ||| ||
Sbjct: 574 aagtcagagagtgaccagagtcacaaatttgatttgatgaaggcatcagaaaaactcagc 633
Query: 300 aaagctttaaaagaggcagaaattcgttcattagtggatggaacgttacagaagaatggt 359
|||| ||| |||||||||| || |||| ||||||||| | |||| ||||| |||
Sbjct: 634 aaagtgttacaagaggcagatatccgtttgttagtggatactttgctacaaaagaacggt 693
Query: 360 acagtgaaggctgatcaggaagcaaaactagaacagaaagtgctcatcaagcaattggag 419
| | | |||||| |||||||||||| |||||| ||| |||||||||||||| |||||
Sbjct: 694 gctgagttggctgacaaggaagcaaaacgagaacaaaaattgctcatcaagcaactggag 753
Query: 420 aaaaataaacgagaagtt 437
||||||||||||||||||
Sbjct: 754 aaaaataaacgagaagtt 771
>29645.m000077 conserved hypothetical protein
Length = 390
Score = 58.0 bits (29), Expect = 1e-07
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 896 tattcgttcaaataggaagcagcattggagcattcgtcaaaagcctaagactgaattatt 955
|||| ||||||| || || || ||||||||||| |||| ||||||| ||||||||||||
Sbjct: 41 tatttgttcaaaaagaaaacaacattggagcatacgtcggaagcctaggactgaattatt 100
Query: 956 taaggaact 964
| |||||||
Sbjct: 101 tgaggaact 109