Jatropha Genome Database
- JcCB0235721.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0235721.10 - phase: 0 /partial
(1590 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29727.m000488 DNA binding protein, putative 274 2e-72
>29727.m000488 DNA binding protein, putative
Length = 4125
Score = 274 bits (138), Expect = 2e-72
Identities = 269/313 (85%), Gaps = 6/313 (1%)
Strand = Plus / Plus
Query: 1276 gatccatcctcatcactgcaggctgttgtttcacctccacaagtaggttcaccatcaacc 1335
|||||||||||||| || |||||||||||||| || |||||||||| ||||||||||||
Sbjct: 3814 gatccatcctcatccctacaggctgttgtttcgtcttcacaagtaggctcaccatcaacc 3873
Query: 1336 atggttattccacaactgaatcaacaagcacaacagcagccccagcaacagcctagtcca 1395
|||| ||||| |||||||| ||||| ||||| |||| |||||||||||||||
Sbjct: 3874 atgggaattccgcaactgaaccaacagcaacaac------cccaacaacagcctagtcca 3927
Query: 1396 cagcaaatgagccagcgaacacccatgagtccacagttgagttcaggagcgattcatgca 1455
|| ||||||||||| || || || ||||| ||||| | ||||||||||| || ||||||
Sbjct: 3928 caacaaatgagccaacggacgccaatgagcccacaaattagttcaggagcaatccatgca 3987
Query: 1456 atgagtgctggtaatccagaagcttgtcctgccagtccacagttgagttctcaaacccta 1515
|||||||||||||||||||| |||||||||||||||||||||||||| || || || ||
Sbjct: 3988 atgagtgctggtaatccagaggcttgtcctgccagtccacagttgagctcacagactctt 4047
Query: 1516 ggctcagttggaagtataacaaattctccaatggagctccaaggggtaaacaaaagcaac 1575
|||||||| ||||| || ||||| ||||| |||||||||||||| |||||||||||||||
Sbjct: 4048 ggctcagtaggaagcatcacaaactctccgatggagctccaaggtgtaaacaaaagcaac 4107
Query: 1576 tctgttagtaatg 1588
||||||| |||||
Sbjct: 4108 tctgttaataatg 4120
Score = 264 bits (133), Expect = 1e-69
Identities = 288/339 (84%), Gaps = 3/339 (0%)
Strand = Plus / Plus
Query: 1 cattttgcagatttgcttgcagcgcaattttgttcactgatgatacgtgaaggttatctt 60
|||||||| ||||||||||| || |||||||||||||||||||| |||||||| ||||||
Sbjct: 2458 cattttgcggatttgcttgcggcacaattttgttcactgatgattcgtgaaggatatctt 2517
Query: 61 gtggaagataatattcaaccaaagcctacccagatgaatattgcatcgactagtcaacca 120
||||||||||||||||||||||||||||||| |||||| || | || | ||| ||||||
Sbjct: 2518 gtggaagataatattcaaccaaagcctacccgcatgaatgtttcctcaagtagccaacca 2577
Query: 121 attgctgttggaatccctcctaataactcagcagctgaggtgcaaaa---atacaatgaa 177
| ||||| |||||| | |||||||| ||||||||||||||||| | |||||||||
Sbjct: 2578 aatgctgccggaatcgcacctaataattcagcagctgaggtgcagcagcaatacaatgag 2637
Query: 178 gcagtttcggctcaggctcccaatgacataaaaccaagtctgagcgggaatgcttccatt 237
||||| || | |||||| ||||||| |||| |||| | | || || ||||| ||||
Sbjct: 2638 gcagtctcaggtcaggcatccaatgaagtaaagccaaattttagtggtaatgcacccatg 2697
Query: 238 aatccctctcagaatctattagcgaatgctaggatgctgcctcctggaaacccaaaagcc 297
||||| || |||||||||||||| | ||| ||||||||||||||||||||||| |||||
Sbjct: 2698 aatccatcccagaatctattagcaagtgccaggatgctgcctcctggaaaccctcaagcc 2757
Query: 298 ttaccaatgtctcaaggtcttgtgtctgcagtttcaatg 336
||||| |||||||||||||| |||||||||||||||||
Sbjct: 2758 ttaccgatgtctcaaggtctcttgtctgcagtttcaatg 2796
Score = 200 bits (101), Expect = 2e-50
Identities = 155/173 (89%)
Strand = Plus / Plus
Query: 947 ctcagtctggcatagctgggatgtcaggagccagacagatccaaccaggttctgctagtc 1006
||||||| |||||||||||||||||||||||||||||||| || ||||||||||| |||
Sbjct: 3467 ctcagtcaggcatagctgggatgtcaggagccagacagatgcacccaggttctgcaggtc 3526
Query: 1007 tttccatgctgggccaatctctgaaccgagctaacatgaatccaatgcaacgaagtgcaa 1066
|||| ||||||||||| ||||||||||| ||||||||||| ||||||||||| |||||||
Sbjct: 3527 tttcaatgctgggccagtctctgaaccgtgctaacatgaacccaatgcaacggagtgcaa 3586
Query: 1067 taggcccaatgggtccaccaaaattgatggcaggggtgaacctttatgtgaac 1119
| || || ||||||||||| ||||||||||||||| |||| || ||| |||||
Sbjct: 3587 tggggcctatgggtccaccgaaattgatggcagggatgaatctctatatgaac 3639
Score = 178 bits (90), Expect = 7e-44
Identities = 164/188 (87%), Gaps = 3/188 (1%)
Strand = Plus / Plus
Query: 625 ccacaaatgcaacagaagaaaatgatgatggggcttggaacagcaatgggcatgggaaat 684
||||| |||||||| | ||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 3136 ccacagatgcaacaaaggaaaatgatgatgggacttgggacagcaatgggcatgggaaat 3195
Query: 685 atggccaacaatatggttggtctaggaggccacagtaataccatgggccttggtggtgca 744
|||| ||||||||||||||| |||||||||| |||||| |||||||| |||| ||||||
Sbjct: 3196 atgggcaacaatatggttggcctaggaggcctgagtaatgccatgggcattggaggtgca 3255
Query: 745 aggggaatggga---cctggaatctcggggccaatgtcatctatttctggaatgaataat 801
|||| ||||||| |||||||||||||| ||||| || |||| || || ||||| |||
Sbjct: 3256 agggcaatgggagggcctggaatctcgggatcaatggcacctatatccggcatgaacaat 3315
Query: 802 gtgggtca 809
||||||||
Sbjct: 3316 gtgggtca 3323
Score = 115 bits (58), Expect = 8e-25
Identities = 120/141 (85%), Gaps = 6/141 (4%)
Strand = Plus / Plus
Query: 457 caacagcattcacagttccagaggtcagcaatgatgcttccttctaattcactctctcac 516
|||||||| ||||||||||||||| || ||||| ||||||| ||| |||||||||
Sbjct: 2911 caacagcaatcacagttccagaggccaccaatggtgcttccatct------ctctctcac 2964
Query: 517 ttgaatgctcttgggcagaattctaatatgcagctgggcaatcacatggtcaataagcct 576
|||||| | |||||||||||||| || ||||||||||| | |||||||||||| ||||||
Sbjct: 2965 ttgaatacacttgggcagaattcaaacatgcagctggggagtcacatggtcaacaagcct 3024
Query: 577 tcgcaccttcagcatcagctg 597
||||| || |||| |||||||
Sbjct: 3025 tcgcatctccagcttcagctg 3045