Jatropha Genome Database

JcCB0234681.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0234681.10 + phase: 0 /partial
         (456 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30221.m002218 mads box protein, putative                              343   6e-94

>30221.m002218 mads box protein, putative
          Length = 702

 Score =  343 bits (173), Expect = 6e-94
 Identities = 317/365 (86%)
 Strand = Plus / Plus

                                                                       
Query: 88  ggtgaggacatgagttccattccttttgatgatttagatgaactcgaacaagaactagaa 147
           ||||| |||||||| || ||||| ||||| || || |  ||||| |||||||||||||| 
Sbjct: 331 ggtgaagacatgagctctattccatttgaggagttgggggaacttgaacaagaactagag 390

                                                                       
Query: 148 cgctctgttgccaaggtccgcaaccggaagaatgagctcttgcagcagcaactggataat 207
           ||||| || |||||||| ||  |||||||||||||||||||||| ||||| |||||||||
Sbjct: 391 cgctccgtggccaaggttcgggaccggaagaatgagctcttgcaacagcagctggataat 450

                                                                       
Query: 208 ctgcacaggaaggagcgaatgttggaggaggaaaatggcaatatgtaccgttggatccag 267
           |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 451 ctgcgcaggaaggagcgaatgttggaggaggaaaatggcaatatgtaccgttggattcag 510

                                                                       
Query: 268 gatcatcgcgtggcaatggagtatcagcacgcgacactggaagcaaagccagtggagcat 327
           || |||||||  ||  ||||||| ||||| |||||| ||||||||||||||||||| |||
Sbjct: 511 gagcatcgcgcagcgctggagtaccagcaggcgacaatggaagcaaagccagtggaacat 570

                                                                       
Query: 328 caacaagttcttgatcaattcccattttgtggagaaccgagtagtgtccttcagcttgga 387
           || |||||||| ||||| |||||||| ||||| || || |  |||||||||||||| | |
Sbjct: 571 cagcaagttctggatcagttcccattctgtggggagcctaacagtgtccttcagctcgca 630

                                                                       
Query: 388 accattcattctcaaatccattcataccatctgcagcttgctcagcccaaccttcaaggt 447
           |||||||  |||||||| ||| |||||||||| ||||| |||||||| || |||||||||
Sbjct: 631 accattccctctcaaattcatccataccatctccagctcgctcagccaaatcttcaaggt 690

                
Query: 448 tctag 452
           |||||
Sbjct: 691 tctag 695