Jatropha Genome Database

JcCB0231591.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0231591.10 + phase: 1 /pseudo/partial
         (476 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29848.m004540 DNA-directed RNA polymerase subunit, putative           335   1e-91

>29848.m004540 DNA-directed RNA polymerase subunit, putative
          Length = 3612

 Score =  335 bits (169), Expect = 1e-91
 Identities = 396/469 (84%), Gaps = 2/469 (0%)
 Strand = Plus / Plus

                                                                        
Query: 8    agtttgcaatgatcgaaccggtgaaatggttcattctctcatatttatgggaccaacatt 67
            ||||| |||||  ||||| |||||||||||||  ||||||||||||||||| || |||||
Sbjct: 3141 agtttacaatgggcgaactggtgaaatggttcgatctctcatatttatgggtcccacatt 3200

                                                                        
Query: 68   ctaccagcagttagttcacatggcttaagacaaagtaaaatttacgcaacacggggcctg 127
            ||||||||  ||  | ||||||||| ||||||||||||| ||  |||||||| |||||||
Sbjct: 3201 ctaccagcgattgatccacatggctgaagacaaagtaaagttc-cgcaacactgggcctg 3259

                                                                        
Query: 128  tccatccacttaccaggcagtctgttgcagaccggaagcgttttggtggtatcaagtttg 187
            | || ||||| ||||| ||| | |||||||| || |||||||||||||||||||||||||
Sbjct: 3260 ttcacccactcaccagacagccagttgcagatcgcaagcgttttggtggtatcaagtttg 3319

                                                                        
Query: 188  gtgagatggagcgtgactgcctcatagctcacggtgcatctgcaaacctgcatgagcgac 247
            | ||||||||||| |||||||| |||||||| |||||||||||||| ||||||||||| |
Sbjct: 3320 gagagatggagcgcgactgccttatagctcatggtgcatctgcaaatctgcatgagcgcc 3379

                                                                        
Query: 248  tttttactctcagcgactcttagcagatgcatatttgccag-actgcaaaaatttcacga 306
            |||||||||||||||||||||  |||||||||||||||||| | ||||| ||  |  | |
Sbjct: 3380 tttttactctcagcgactcttcacagatgcatatttgccagaaatgcaagaacgtggcaa 3439

                                                                        
Query: 307  atgtgattgaacggacagtgccacaaagccgcaagattaaggccccttattgcagaattt 366
            |||||||| ||||| | |||||     | |||||||||| ||  || |||||| |  |||
Sbjct: 3440 atgtgattcaacgggcggtgcctggtggtcgcaagattaggggtccatattgccgggttt 3499

                                                                        
Query: 367  gtgaatctgctgatgatactgtgaaggttaatttaccttatggggccaaggtattatgcc 426
            |||| |||| |||||| | ||| ||||| ||| ||||||||||||||||| |||| || |
Sbjct: 3500 gtgagtctgttgatgaaattgttaaggtaaatgtaccttatggggccaagttattgtgtc 3559

                                                             
Query: 427  aggagcttttcagcatgggtataagtctgaagtttgaaactcagctttg 475
            |||| |||||||||||||| |||||| ||||||||||||| | ||||||
Sbjct: 3560 aggaacttttcagcatgggcataagtttgaagtttgaaacccggctttg 3608