Jatropha Genome Database

JcCB0231181.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0231181.20 - phase: 1 /partial
         (401 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m014157 nucleic acid binding protein, putative                  242   1e-63

>30170.m014157 nucleic acid binding protein, putative
          Length = 1386

 Score =  242 bits (122), Expect = 1e-63
 Identities = 310/374 (82%), Gaps = 9/374 (2%)
 Strand = Plus / Plus

                                                                        
Query: 28   ttcctaatgcaccggttcctccagcagcagttccagcttcatctgtaccttgtgttggag 87
            |||| ||||| | |||||||||| ||||||||||||||||||||||         |||||
Sbjct: 1019 ttccaaatgcccaggttcctccaccagcagttccagcttcatctgt---------tggag 1069

                                                                        
Query: 88   tttcacaggtgaaggatgtgaattactataagaacttgatccagcaacatggaggagaaa 147
            || |||| || || ||  ||||||||||||||||||||||||||||||| || || ||||
Sbjct: 1070 ttccacaagttaaagacatgaattactataagaacttgatccagcaacacgggggggaaa 1129

                                                                        
Query: 148  gacaagaaacccctcatcaatacagtagccgttacagtcatcaaataggatcgaacccag 207
            |||||||| |||||||||| ||| ||| | | |||||||| |    |||| | |||| ||
Sbjct: 1130 gacaagaagcccctcatcagtacggtaacagatacagtcagcttgcaggaacaaaccaag 1189

                                                                        
Query: 208  aattagttaatcccaaatcaagggatgcaaagcctaagattatgaagccttgtatttatt 267
            ||||||||||||| || ||||| ||    |||||||||||||||||||||||||||||||
Sbjct: 1190 aattagttaatccaaagtcaagagagttgaagcctaagattatgaagccttgtatttatt 1249

                                                                        
Query: 268  ttaatagttcaagaggatgtcgtcatggagccaattgtgcataccagcacgacacgtcat 327
            |||| ||||||||||||||  | || || |||||||||||||| ||||| ||| |||| |
Sbjct: 1250 ttaacagttcaagaggatgcagacacggggccaattgtgcatatcagcatgacccgtcgt 1309

                                                                        
Query: 328  ccccgcaacggagcagtagcataccagaggtgcaaaatgctaagagaatgaagatggata 387
             || |||| | |||||   |||| |||||||||||| |||||||||||||||  ||||||
Sbjct: 1310 tccagcaaagaagcagcgccatatcagaggtgcaaagtgctaagagaatgaaagtggata 1369

                          
Query: 388  gggaaattagcagt 401
            ||||||||||||||
Sbjct: 1370 gggaaattagcagt 1383