Jatropha Genome Database

JcCB0231181.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0231181.10 - phase: 0 
         (711 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29822.m003508 conserved hypothetical protein                          188   3e-47

>29822.m003508 conserved hypothetical protein
          Length = 387

 Score =  188 bits (95), Expect = 3e-47
 Identities = 257/311 (82%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgttgaagttcctgtcaaaggtacggattgagttcaatgcgttggaccctcgcatagct 60
           ||||||||||||||||| ||||||   ||||| ||||||||  | || || |||| ||| 
Sbjct: 1   atgttgaagttcctgtcgaaggtaaaaattgaattcaatgccctagatccacgcacagca 60

                                                                       
Query: 61  tcttgcatggagttcttagctcaatgcaacgcccgcaaggccaaagaatcgaacccggct 120
           || ||| |||||||  |||| || |||||||| ||||| ||||| ||||| || || || 
Sbjct: 61  tcatgcctggagtttctagcacagtgcaacgctcgcaaagccaaggaatcaaatcccgca 120

                                                                       
Query: 121 tgccaggtcttagtcaagcggcgaaccgatgaccacccgccgcaaatcactgtcactttc 180
           |||||  ||||||||||||| ||||| || ||||||||||| ||||||||||||||||| 
Sbjct: 121 tgccaactcttagtcaagcgccgaactgacgaccacccgccccaaatcactgtcactttt 180

                                                                       
Query: 181 gttaacggagtcgaggaggtttttgacggtactaagattcctgctcagaccattaggacc 240
           |||||||| || |||||||| ||||| |||||||   || |||||||||| ||||| |  
Sbjct: 181 gttaacggtgttgaggaggtctttgatggtactaccgtttctgctcagactattagaaat 240

                                                                       
Query: 241 atgattttggagaagggtcagctcctcgagacggagcaaatgttccgtgaagctggtgag 300
           |||||||| ||||| ||||||   || ||||| || |||||||| |||||||||||||||
Sbjct: 241 atgattttagagaaaggtcagagtcttgagactgaacaaatgtttcgtgaagctggtgag 300

                      
Query: 301 aagtggcctgt 311
           || ||||||||
Sbjct: 301 aaatggcctgt 311