Jatropha Genome Database

JcCB0230941.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0230941.10 - phase: 1 /pseudo/partial
         (449 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29681.m001322 alpha-1,3-mannosyltransferase, putative                 337   3e-92
30098.m001706 pentatricopeptide repeat-containing protein, putative    66   2e-10

>29681.m001322 alpha-1,3-mannosyltransferase, putative
          Length = 1227

 Score =  337 bits (170), Expect = 3e-92
 Identities = 342/398 (85%), Gaps = 1/398 (0%)
 Strand = Plus / Plus

                                                                        
Query: 16   gaaaacgttgaatacttggagga-cttaaaagcttagcagaaagggaaggagtgtctgat 74
            ||||| ||||||||||||||||| |||||||  || ||||||||||||||||||||| ||
Sbjct: 790  gaaaatgttgaatacttggaggaacttaaaatgttggcagaaagggaaggagtgtctcat 849

                                                                        
Query: 75   cgggttagcttcatcacatcttgctcgacggttgaaagaaatgaacttctttctcaatgc 134
            ||||||| |||||||||||||||||| ||   |||||||||||  |||||||| ||||||
Sbjct: 850  cgggttaacttcatcacatcttgctcaacaactgaaagaaatgctcttctttcccaatgc 909

                                                                        
Query: 135  ttgagtgtcatttatacaccaaaggatgaacactttggcattgttccgctggaggcaatg 194
             || | || |||||||| || ||||||||||||||||||||||| || ||||||||||||
Sbjct: 910  ctgtgcgttatttatacgccgaaggatgaacactttggcattgtcccactggaggcaatg 969

                                                                        
Query: 195  gcagcatataaacctgttattgcatgcaacagtgggggtcctacagaaacagttaaggac 254
            ||||||||||| |||||||||||||||||||| ||||||||    ||||| || |  || 
Sbjct: 970  gcagcatataagcctgttattgcatgcaacagcgggggtcccgtggaaacggtgatagat 1029

                                                                        
Query: 255  ggagtaacaggatttctttgcgaatctactcctaaagctttctctctggctatggctaaa 314
            |||||||| |||||||||||||| ||||||||| || | |||||| | || ||||| |||
Sbjct: 1030 ggagtaacgggatttctttgcgactctactcctcaatcattctctttagccatggcgaaa 1089

                                                                        
Query: 315  ctcattcaggatcctcagatggcaaagagaatgggggaacaagcacgacagcatgttacc 374
             |||||||||||||  ||||||||||||||||||| ||| | |||   |||||||| |||
Sbjct: 1090 ttcattcaggatccagagatggcaaagagaatgggtgaagaggcaaagcagcatgtaacc 1149

                                                  
Query: 375  gagtcattttcgacaaagatttttgggcagcatttgaa 412
            ||||||||||| || ||||||||||| ||||| |||||
Sbjct: 1150 gagtcattttctaccaagatttttggccagcacttgaa 1187


>30098.m001706 pentatricopeptide repeat-containing protein, putative
          Length = 2277

 Score = 65.9 bits (33), Expect = 2e-10
 Identities = 81/96 (84%), Gaps = 2/96 (2%)
 Strand = Plus / Plus

                                                                        
Query: 254  cggagtaacaggatttctttgcgaatctactcctaaagctttctctctggctatggctaa 313
            ||||||||||||||||||||| || |||||||  ||| | |||||  |||  ||||  ||
Sbjct: 2181 cggagtaacaggatttctttgtgactctactc--aaatcattctccttggtaatggtgaa 2238

                                                
Query: 314  actcattcaggatcctcagatggcaaagagaatggg 349
            ||||||||||||| |  |||||||||||||||||||
Sbjct: 2239 actcattcaggatacgaagatggcaaagagaatggg 2274