Jatropha Genome Database

JcCB0224631.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0224631.10 - phase: 2 /partial
         (787 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29647.m002075 Ent-kaurene synthase A, chloroplast precursor, put...   115   4e-25

>29647.m002075 Ent-kaurene synthase A, chloroplast precursor, putative
          Length = 2403

 Score =  115 bits (58), Expect = 4e-25
 Identities = 124/146 (84%)
 Strand = Plus / Plus

                                                                        
Query: 249  taaatggaaggaaattggaaacaaagacaaggcaggaacttgtcggaatagtgcttggaa 308
            |||||| |||||| ||||||  ||||||||   ||||||||||| | |||| | ||||||
Sbjct: 1877 taaatgcaaggaagttggaagtaaagacaaatgaggaacttgtcaggatagcgattggaa 1936

                                                                        
Query: 309  ccctaaacgatgtctctttggacgcactggtggctcatgggacagatattagtcacagtt 368
             |||||||||||||||||||||  ||||  |||||||||||| ||| ||||| |||  ||
Sbjct: 1937 tcctaaacgatgtctctttggatacactactggctcatgggaaagacattagccacgatt 1996

                                      
Query: 369  tacgtcatgcttgggaaaaatggctg 394
            ||||||||||||||||||| ||||||
Sbjct: 1997 tacgtcatgcttgggaaaagtggctg 2022



 Score =  109 bits (55), Expect = 3e-23
 Identities = 151/183 (82%)
 Strand = Plus / Plus

                                                                        
Query: 595  aagcacaaccccagaaatagaatcagatatgcaagaactgacgcagttagtgctccaaaa 654
            ||||||||||||||||||||| ||||| |||||| ||||   ||||||||   |||||||
Sbjct: 2208 aagcacaaccccagaaatagagtcagacatgcaacaacttgtgcagttagcaatccaaaa 2267

                                                                        
Query: 655  ttcctcagatggaatggattccaatatcaagcaaacattttttactgtggtcaaaagttt 714
            ||||||||||| ||| |||||| | ||||||||||||||||| |  || | |||||| ||
Sbjct: 2268 ttcctcagatgaaatagattccgagatcaagcaaacatttttcatggtagccaaaagctt 2327

                                                                        
Query: 715  ttactacactgccgtttgcgatcctgggactatcaattaccatatttctaaagtcctctt 774
            |||||||   ||| | |  |||||||||||| | || ||||||||| ||| ||| |||||
Sbjct: 2328 ttactaccaagccatctctgatcctgggactttgaactaccatattgctagagtactctt 2387

               
Query: 775  tga 777
            |||
Sbjct: 2388 tga 2390



 Score = 95.6 bits (48), Expect = 4e-19
 Identities = 111/132 (84%)
 Strand = Plus / Plus

                                                                        
Query: 1    gtggtacgaagaatgtaacttgggagcttttggggtaagcaaaagagagcttctgtatgc 60
            |||||||||||||||| | ||||||   ||||||||||||| |||||| || ||||  ||
Sbjct: 1635 gtggtacgaagaatgtgaattgggaaactttggggtaagcagaagagaactgctgttagc 1694

                                                                        
Query: 61   gtattacatggcagcagccagcatatttgagccagaaaggtcaaaagaaagagttgcatg 120
             ||||   | || || |||||||| ||||||||||||||||||||||| ||| |||||||
Sbjct: 1695 atattttgtagcggcggccagcatttttgagccagaaaggtcaaaagagagacttgcatg 1754

                        
Query: 121  ggccaagaccac 132
            ||| ||||||||
Sbjct: 1755 ggctaagaccac 1766