Jatropha Genome Database

JcCB0224601.10

BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0224601.10 + phase: 1 /pseudo
         (546 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29929.m004752 two-component sensor histidine kinase bacteria, pu...   206   1e-52
27647.m000179 two-component sensor histidine kinase bacteria, pu...    72   4e-12
29737.m001227 two-component system sensor histidine kinase/respo...    70   2e-11
29929.m004754 two-component sensor histidine kinase bacteria, pu...    68   6e-11
29889.m003245 sensor histidine kinase, putative                        58   6e-08

>29929.m004752 two-component sensor histidine kinase bacteria,
           putative
          Length = 1755

 Score =  206 bits (104), Expect = 1e-52
 Identities = 221/260 (85%)
 Strand = Plus / Plus

                                                                       
Query: 9   tgtggtttagcaagagatgctctgaaccttcttcgggagaggaaagatggttacgacatt 68
           ||||| |||||||||||||||||| |||| ||||| |||||||||||||| || ||||||
Sbjct: 136 tgtgggttagcaagagatgctctgtacctgcttcgtgagaggaaagatggatatgacatt 195

                                                                       
Query: 69  gttatcagtgatgtcaacatgcctgacatggatggttttaaacttctagagcatgtcgga 128
           || ||||||||||| ||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct: 196 gtgatcagtgatgtgaacatgcctgatatggatggttttaagcttctagagcatgttgga 255

                                                                       
Query: 129 cttgaaatggatcttcctgtgattatgatgtctgttgatggtgaaaaaagtaaactgatg 188
            | || |||||||| || || || ||||||||||||||||| |||| ||||    | |||
Sbjct: 256 ttggagatggatctgccagtcatcatgatgtctgttgatggagaaacaagtcgggtaatg 315

                                                                       
Query: 189 aaagggattcagcatggagcttccgattatcttctcaagccaatacgaatggaacaactt 248
           |||||  ||||||| ||||| | ||||||||| || ||||||||| ||||| || |||| 
Sbjct: 316 aaaggtgttcagcacggagcgtgcgattatctccttaagccaataagaatgaaagaactc 375

                               
Query: 249 aggaatttatggcagtatgt 268
           || ||| |||||||| ||||
Sbjct: 376 agaaatatatggcagcatgt 395


>27647.m000179 two-component sensor histidine kinase bacteria,
           putative
          Length = 2010

 Score = 71.9 bits (36), Expect = 4e-12
 Identities = 66/76 (86%)
 Strand = Plus / Plus

                                                                       
Query: 87  atgcctgacatggatggttttaaacttctagagcatgtcggacttgaaatggatcttcct 146
           |||||||| |||||||||||||| || || |||||||| || || |||||||| ||||| 
Sbjct: 292 atgcctgatatggatggttttaagctccttgagcatgttggcctagaaatggaccttcca 351

                           
Query: 147 gtgattatgatgtctg 162
           || |||||||||||||
Sbjct: 352 gtaattatgatgtctg 367


>29737.m001227 two-component system sensor histidine kinase/response
           regulator, putative
          Length = 2031

 Score = 69.9 bits (35), Expect = 2e-11
 Identities = 62/71 (87%)
 Strand = Plus / Plus

                                                                       
Query: 69  gttatcagtgatgtcaacatgcctgacatggatggttttaaacttctagagcatgtcgga 128
           |||||||||||||| |||||||||||||||||||| ||||| || || |||| ||| || 
Sbjct: 199 gttatcagtgatgttaacatgcctgacatggatggctttaagctacttgagcttgtaggg 258

                      
Query: 129 cttgaaatgga 139
           ||||| |||||
Sbjct: 259 cttgagatgga 269


>29929.m004754 two-component sensor histidine kinase bacteria,
           putative
          Length = 1260

 Score = 67.9 bits (34), Expect = 6e-11
 Identities = 61/70 (87%)
 Strand = Plus / Plus

                                                                       
Query: 200 gcatggagcttccgattatcttctcaagccaatacgaatggaacaacttaggaatttatg 259
           ||||||||| |  ||||||||||| ||||||||||| ||| || ||||||||||| ||||
Sbjct: 327 gcatggagcatgtgattatcttcttaagccaatacgcatgaaagaacttaggaatatatg 386

                     
Query: 260 gcagtatgta 269
           |||| |||||
Sbjct: 387 gcagcatgta 396



 Score = 54.0 bits (27), Expect = 9e-07
 Identities = 84/103 (81%)
 Strand = Plus / Plus

                                                                       
Query: 19  caagagatgctctgaaccttcttcgggagaggaaagatggttacgacattgttatcagtg 78
           ||||||||||||||||  | ||||| |  ||||||||||  || |||||||| ||  |||
Sbjct: 146 caagagatgctctgaatatgcttcgtggaaggaaagatgaatatgacattgtaatttgtg 205

                                                      
Query: 79  atgtcaacatgcctgacatggatggttttaaacttctagagca 121
           |||| |  | | ||||||||||||||||||  |||||||||||
Sbjct: 206 atgtgactacgtctgacatggatggttttaggcttctagagca 248


>29889.m003245 sensor histidine kinase, putative
          Length = 2049

 Score = 58.0 bits (29), Expect = 6e-08
 Identities = 80/97 (82%)
 Strand = Plus / Plus

                                                                       
Query: 66  attgttatcagtgatgtcaacatgcctgacatggatggttttaaacttctagagcatgtc 125
           ||||| || ||||||||  ||||||| ||||||||||| |||||||| || |||||  | 
Sbjct: 241 attgtcataagtgatgttcacatgccagacatggatggatttaaactccttgagcacatt 300

                                                
Query: 126 ggacttgaaatggatcttcctgtgattatgatgtctg 162
           || || || |||||||| ||||| || ||||||||||
Sbjct: 301 gggctagagatggatctgcctgttatcatgatgtctg 337