Jatropha Genome Database

JcCB0215961.30
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0215961.30 - phase: 1 /partial
         (158 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30128.m008587 pentatricopeptide repeat-containing protein, putative   127   2e-29

>30128.m008587 pentatricopeptide repeat-containing protein, putative
          Length = 2061

 Score =  127 bits (64), Expect = 2e-29
 Identities = 127/148 (85%)
 Strand = Plus / Plus

                                                                        
Query: 11   cacctatactacttcctataactactacatgcacggctacaatgaaagcgtacatggata 70
            |||||| || |||||||| ||||| |||| ||| || | |||||||||||| ||||||||
Sbjct: 1911 cacctacacaacttcctacaactattacaggcatgggttcaatgaaagcgtgcatggata 1970

                                                                        
Query: 71   ctttccagaccaagcatacgccactgttgatgacaacacagttcaccttttcagtgaaga 130
             ||||| ||||| || || |  || |||||||| ||||||||||| ||||||||||||||
Sbjct: 1971 ttttcctgaccaggcctatgagaccgttgatgataacacagttcatcttttcagtgaaga 2030

                                        
Query: 131  caatgttcatgcatattgcaccattatg 158
             ||||||||||| |||||||||||||||
Sbjct: 2031 taatgttcatgcctattgcaccattatg 2058