Jatropha Genome Database

JcCB0215961.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0215961.10 - phase: 2 /pseudo/partial
         (199 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30128.m008586 DNA replication licensing factor MCM2, putative         184   1e-46
29693.m002033 DNA replication licensing factor MCM3, putative          66   8e-11
30076.m004661 DNA replication licensing factor MCM7, putative          54   3e-07

>30128.m008586 DNA replication licensing factor MCM2, putative
          Length = 2793

 Score =  184 bits (93), Expect = 1e-46
 Identities = 168/189 (88%), Gaps = 3/189 (1%)
 Strand = Plus / Minus

                                                                        
Query: 2    tcctgatcattcatcttgtcaaactcatcaataagacaaatacccttatcagctaatacg 61
            ||||||||||||||||||||||||||||| |||||||| || ||||| ||||| || || 
Sbjct: 1847 tcctgatcattcatcttgtcaaactcatcgataagacagatccccttgtcagccaaaaca 1788

                                                                        
Query: 62   agcgccccctcctttccaggggtccactcccttgtcactgggtctttgtgcactgctgct 121
            || | | ||||| ||||| |||||||||| |||||||| ||||| |||||||||||||| 
Sbjct: 1787 ag-ggcacctcc-ttcca-gggtccactctcttgtcaccgggtccttgtgcactgctgca 1731

                                                                        
Query: 122  gttagacctacagctgatgctcctttaccagtagtatacacagccctctgcccagtcttt 181
            |||||||||||||| || ||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 1730 gttagacctacagccgaagctcctttaccagtagtgtacacagccctctgtccagtcttt 1671

                     
Query: 182  tctacatac 190
            || ||||||
Sbjct: 1670 tcaacatac 1662


>29693.m002033 DNA replication licensing factor MCM3, putative
          Length = 2310

 Score = 65.9 bits (33), Expect = 8e-11
 Identities = 33/33 (100%)
 Strand = Plus / Minus

                                             
Query: 2    tcctgatcattcatcttgtcaaactcatcaata 34
            |||||||||||||||||||||||||||||||||
Sbjct: 1220 tcctgatcattcatcttgtcaaactcatcaata 1188


>30076.m004661 DNA replication licensing factor MCM7, putative
          Length = 2157

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                   
Query: 8    tcattcatcttgtcaaactcatcaataagacaaataccc 46
            |||| ||||||||||||||||||||||  ||||||||||
Sbjct: 1340 tcatccatcttgtcaaactcatcaatagcacaaataccc 1302