Jatropha Genome Database
- JcCB0213661.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0213661.20 - phase: 2 /pseudo/partial
(1194 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
28644.m000943 ATP-dependent RNA helicase, putative 1168 0.0
27632.m000168 ATP-dependent RNA helicase, putative 62 8e-09
>28644.m000943 ATP-dependent RNA helicase, putative
Length = 3810
Score = 1168 bits (589), Expect = 0.0
Identities = 1038/1186 (87%), Gaps = 8/1186 (0%)
Strand = Plus / Plus
Query: 16 aagattatgttggagctgcattgaagcaatctatgaccatcaacattaccattgcaccag 75
|||||||||||| ||||||| |||||||| | ||||||||| ||||||||| | | ||||
Sbjct: 2279 aagattatgttgaagctgcagtgaagcaagccatgaccatccacattaccagtcctccag 2338
Query: 76 gcgatattctgatatttatgactggccaagacgaaatcgaagtggcctgttatgttcttg 135
| || ||||| ||||| |||||||||||||| || || |||| || ||||||| ||||
Sbjct: 2339 gtgacattcttatattcatgactggccaagatgagattgaagcagcttgttatgcccttg 2398
Query: 136 ctgagcacatggaacaactcatctcttcctcaaagaaagcagtagctaagctcttgatac 195
|||||| ||| |||||||||||||||||| ||||||||||||| |||| ||||||||||
Sbjct: 2399 ctgagcgcatagaacaactcatctcttccacaaagaaagcagtccctaaactcttgatac 2458
Query: 196 tgcctatatactcctaactaccagttgattggcaagcaaaaatattccaaaaagcatacg 255
|||| ||||||||| |||| |||| ||||| ||||||||| |||||||| ||||| | |
Sbjct: 2459 tgccgatatactcccaacttccagctgatttgcaagcaaagatattccagaaagctgaag 2518
Query: 256 atgagccccgaaaatgcattgttgccaccaacattgctgaaacatcgttgacagttgatg 315
||| | | || ||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 2519 atggggcgcgtaaatgcattgttgccaccaacattgctgaaacatctttgactgttgatg 2578
Query: 316 gaattttttatgtcattcacacagggtatg-taaaatgaaagtttacaatcataggatgg 374
||||||||||||||||| |||| ||||||| |||||||||||||||||||| ||||||||
Sbjct: 2579 gaattttttatgtcattgacactgggtatggtaaaatgaaagtttacaatcctaggatgg 2638
Query: 375 gtatggatgctctccaagttttccctgttagccgcactgctgctgatcagtgtgctggac 434
|||||||||||||||||||||| ||||||||||| ||||||| |||||| |||||||||
Sbjct: 2639 gtatggatgctctccaagtttttcctgttagccgagctgctgcagatcagcgtgctggac 2698
Query: 435 gtgctagtagaactgacctagctacatgttatatgctttatacagaaagtgcttacctaa 494
||||| ||||||||| || | |||||||||| |||||||||||||||||| |||||||
Sbjct: 2699 gtgctggtagaactggccctggcacatgttataggctttatacagaaagtgcgtacctaa 2758
Query: 495 atgaaatggtgccaagtccagtgccagagatccagaggaccaaccttggtaatgtggttt 554
|||||||| |||| ||||||||||| ||||| |||||||| |||||||| ||||||||||
Sbjct: 2759 atgaaatgctgcccagtccagtgccggagattcagaggacgaaccttgggaatgtggttt 2818
Query: 555 tgttgctcaagtctctcaaaattgataacttgctagattttgatttcatggacccacctc 614
||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||
Sbjct: 2819 tgttgctcaagtctctcaaaattgacaatttgctagattttgatttcatggatccacctc 2878
Query: 615 cacaggataacatcctcaattcaatgtatcagttgtgggtcttgagtgcgcttaacaatg 674
|||| ||||||||||| ||||| ||||||||||||||||||||| |||||||||| ||||
Sbjct: 2879 cacaagataacatccttaattcgatgtatcagttgtgggtcttgggtgcgcttaataatg 2938
Query: 675 ttggacgcctaactgatcttggctggaaaatggtggagtt-ccatcagaccctccacttg 733
||||| |||||||||||||||||||||||||||| ||||| ||| ||| |||||||| |
Sbjct: 2939 ttggaggcctaactgatcttggctggaaaatggttgagttcccactagatcctccactgg 2998
Query: 734 ctaagatgctgttgatgggagagcaactgggatgcataaatgaggttttgacgattgtgt 793
|||||||||| |||||||| ||| |||| ||||| |||||||||||||||| |||||||
Sbjct: 2999 ctaagatgctcttgatgggcgaggaactaggatgtctaaatgaggttttgacaattgtgt 3058
Query: 794 caatgctttcagtgccatcagtgnnnnnnngccccaaagatagagcagaggaaagtgatg 853
| |||||||| || |||||||| | ||||||||||| ||||| | |||||||
Sbjct: 3059 ccatgctttcggtaccatcagtctttttccggcccaaagatagggcagaacagagtgatg 3118
Query: 854 ctgcgagggagaaattttttgttcctgaatctgaccactt-----tacttaatgtttact 908
| || ||||| || |||||||||||||||||||| ||||| ||||||||||||| |
Sbjct: 3119 cggcaagggaaaagttttttgttcctgaatctgatcacttaaccctacttaatgtttatt 3178
Query: 909 tgcaatggaaagagcaccagtatcgtggagattggtgtaatgatcattttctgcatatca 968
||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||
Sbjct: 3179 tgcaatggaaagagcaccagtatcgtggagattggtgcaatgatcattttttgcatgtca 3238
Query: 969 aaggattacg-gaggctagagaagtcagatcccagctgctggatattctcaaaactttga 1027
|||| |||| |||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 3239 aagggctacgaaaggctagagaagtcagatcccagctgttggatattctcaaaactctga 3298
Query: 1028 aaatcccattaacttcttgtgggcatgattgggatgtcataaggaaagcaatttgttctg 1087
||||||| ||||||||||| || ||||||||||| |||||| | ||||| || || ||||
Sbjct: 3299 aaatccctttaacttcttgcggacatgattgggacgtcatacgaaaagctatctgctctg 3358
Query: 1088 catatttccacaatgcagcaaggttaaagggtgttggggaatatgtcaattgcaggaacg 1147
| ||||||||||| |||||||| ||||| ||||| || |||||||| ||||| || || |
Sbjct: 3359 cgtatttccacaacgcagcaagattaaaaggtgtaggagaatatgttaattgtagaaatg 3418
Query: 1148 gaatgccatgccatcttcacccgagtagtgcgctgtatggcttagg 1193
|||||||||| ||||| ||||| |||||||| || ||||| |||||
Sbjct: 3419 gaatgccatgtcatctacacccaagtagtgctctatatggtttagg 3464
>27632.m000168 ATP-dependent RNA helicase, putative
Length = 3096
Score = 61.9 bits (31), Expect = 8e-09
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 282 accaacattgctgaaacatcgttgacagttgatggaattttttatgt 328
||||| |||||||| ||||| |||||| |||||||||||||||||||
Sbjct: 1954 accaatattgctgagacatctttgacaattgatggaattttttatgt 2000