Jatropha Genome Database

JcCB0211371.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0211371.10 + phase: 0 /partial
         (540 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29848.m004622 conserved hypothetical protein                          145   3e-34

>29848.m004622 conserved hypothetical protein
          Length = 1803

 Score =  145 bits (73), Expect = 3e-34
 Identities = 163/193 (84%)
 Strand = Plus / Plus

                                                                        
Query: 326  aagagattatttgcaaagggaaagaatgctgcaaagagttcatcaaaagattccttgctg 385
            ||||||| || ||||||||||||||||| || ||||||||||| || |||||||||||||
Sbjct: 1586 aagagataatatgcaaagggaaagaatgttgtaaagagttcattaagagattccttgctg 1645

                                                                        
Query: 386  ctataccactcaaggaacttgaggaagaagagaaaaagagaaaagtttcaactttctctc 445
            |||||| | | | ||||||||||||  |||| |||||  ||   || ||||| ||||| |
Sbjct: 1646 ctatactaattagggaacttgaggagcaagacaaaaaaggatctgtctcaacattctccc 1705

                                                                        
Query: 446  tcctccagagattgcagatagatttccactacagctcttcttcctcctcctcttcaatga 505
            |  | |||||| |||||||||||||||| ||| |||||||||||||||| |||||| || 
Sbjct: 1706 ttttgcagagactgcagatagatttccattactgctcttcttcctcctcttcttcagtgg 1765

                         
Query: 506  catctcctacttc 518
            |||||||||||||
Sbjct: 1766 catctcctacttc 1778



 Score =  135 bits (68), Expect = 3e-31
 Identities = 176/212 (83%)
 Strand = Plus / Plus

                                                                        
Query: 16   cctgaaaaatttgaaaacttgaaaggagccatgtcttttgatgatatatgggaagacata 75
            |||||||| ||||| |||||| ||||||| |  ||||||||||||||||||||||| |||
Sbjct: 1282 cctgaaaagtttgagaacttgcaaggagctaaatcttttgatgatatatgggaagagata 1341

                                                                        
Query: 76   agtagcatcactgaagaatatgatcataaggtgtatatagttagttggaatgatcatttc 135
            |||||||||||  |||||||||| || |   | || ||||| |||||||||||||| |||
Sbjct: 1342 agtagcatcaccaaagaatatgaccagagaatctacatagtgagttggaatgatcacttc 1401

                                                                        
Query: 136  ttcgtgttgaaagcagatttggatgcttattatattatcgactcattaggagagaggctc 195
            || |||||||| || |||    || |||| || || |||||||| ||||| |||||||| 
Sbjct: 1402 tttgtgttgaaggcggatgccaattcttactacatcatcgactcgttaggcgagaggctt 1461

                                            
Query: 196  tttgagggatgtaaccaagcatacatcttaaa 227
            || |||||||| || || ||||||||||||||
Sbjct: 1462 ttcgagggatgcaatcaggcatacatcttaaa 1493