Jatropha Genome Database
- JcCB0211161.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0211161.10 + phase: 1 /partial
(1152 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29848.m004476 Cyclic nucleotide-gated ion channel, putative 694 0.0
28863.m000090 Cyclic nucleotide-gated ion channel, putative 276 3e-73
36522.m000003 conserved hypothetical protein 123 2e-27
30147.m013975 Cyclic nucleotide-gated ion channel, putative 84 2e-15
29822.m003360 Cyclic nucleotide-gated ion channel, putative 80 3e-14
28863.m000089 Cyclic nucleotide-gated ion channel, putative 62 8e-09
30078.m002325 conserved hypothetical protein 58 1e-07
>29848.m004476 Cyclic nucleotide-gated ion channel, putative
Length = 1890
Score = 694 bits (350), Expect = 0.0
Identities = 509/562 (90%)
Strand = Plus / Plus
Query: 591 cagacctacttgcagtctatcactgtcagacttgaagagtggaggctcaagcgccgagac 650
|||||||||||||| ||||| || ||||||||||||||||||||||||||||| ||||||
Sbjct: 925 cagacctacttgcaatctataacagtcagacttgaagagtggaggctcaagcggcgagac 984
Query: 651 accgaggagtggatgagacatcgccaactgccccaaaatctgagagaacgagttaggcga 710
|| |||||||||||||||||||||||||| || ||||||||| |||||||||||||||||
Sbjct: 985 actgaggagtggatgagacatcgccaactccctcaaaatctgcgagaacgagttaggcga 1044
Query: 711 tttgttcaatataaatggcttgcaactcgaggggctgatgaagagtcaattttgcgagca 770
||||||||||| || ||||||||||||||||||| ||||||||| | || ||||| |||
Sbjct: 1045 tttgttcaatacaagtggcttgcaactcgaggggttgatgaagaaacgatcttgcgtgca 1104
Query: 771 ttacctatagatcttcgtcgagacatccagcgccacctgtgcttggatcttgttcgacga 830
|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1105 ctacctaaagatcttcgtcgagtcatccagcgccacctgtgcttggatcttgttcgacga 1164
Query: 831 gttccttttttctcacaaatggatgatcagctccttgatgccatatgtgagcgattggtg 890
||||| ||||||||||| |||||||||||||| |||||||||||||| |||||| | |||
Sbjct: 1165 gttccctttttctcacagatggatgatcagctacttgatgccatatgcgagcgactagtg 1224
Query: 891 tcctccttgagtatccgaggcacttgtatagtccgtgaaggtgatcctgttacagagatg 950
||||| ||||||| || ||||||||| ||||| ||||||||||||||||||| |||||||
Sbjct: 1225 tcctcgttgagtacccaaggcacttgcatagttcgtgaaggtgatcctgttatagagatg 1284
Query: 951 cttttcattatcagaggaaggctagagagctctactacaaatggaggccggacaggtttc 1010
|||||||| ||||| || |||||||| ||||| || ||||| |||||||| |||||||||
Sbjct: 1285 cttttcatcatcagggggaggctagaaagctcaaccacaaacggaggccgaacaggtttc 1344
Query: 1011 ttcaattcaattactttgagacctggtgatttttgcggtgaagagctgcttacgtgggca 1070
|||||||||||||||||||||||||| ||||| || ||||||||||| ||| |||||||
Sbjct: 1345 ttcaattcaattactttgagacctggcgatttctgtggtgaagagcttcttgcgtgggct 1404
Query: 1071 ttgcttccaaaatctactctcaacttaccttcttccacaaggacagtccgagcactagag 1130
|||||||||||||||||||||||||| || |||||||| |||||||| ||||||| |||
Sbjct: 1405 ttgcttccaaaatctactctcaacttgccgtcttccacgaggacagtaagagcactggag 1464
Query: 1131 gaagtggaagcatttgcattgc 1152
||||||||||| ||||| ||||
Sbjct: 1465 gaagtggaagcgtttgccttgc 1486
Score = 212 bits (107), Expect = 3e-54
Identities = 185/211 (87%)
Strand = Plus / Plus
Query: 44 tctgcttcagtacgttccaagattatacttgatttttcctttaagttctcagatgataaa 103
||||||||||||| |||||||||| || |||||||||||||||||||| |||| || ||
Sbjct: 630 tctgcttcagtacattccaagattgtatctgatttttcctttaagttctgagatcatcaa 689
Query: 104 aaccaatggagtagtcacaaagactgcttgggcaggggctgcatataatctcctactata 163
| ||| ||||||||||||||||||||||||||| |||||||| || || ||||| || ||
Sbjct: 690 agccactggagtagtcacaaagactgcttgggctggggctgcctacaacctcctgctcta 749
Query: 164 catgttggctagtcatgtcttgggggcctcgtggtatttattgtcaattgagcgtcaagc 223
||||||||||||||||| || |||||||| |||||| | ||||||||||||||||| ||
Sbjct: 750 tatgttggctagtcatgttttaggggcctcatggtatctgttgtcaattgagcgtcaggc 809
Query: 224 aacatgctggaaatctgcttgcagacatgaa 254
||||||||||| | |||||| |||||||||
Sbjct: 810 gacatgctggaagtatgcttgtagacatgaa 840
>28863.m000090 Cyclic nucleotide-gated ion channel, putative
Length = 969
Score = 276 bits (139), Expect = 3e-73
Identities = 459/563 (81%), Gaps = 2/563 (0%)
Strand = Plus / Plus
Query: 590 gcagacctacttgcagtctatcactgtcagacttgaagagtggaggctcaagcgccgaga 649
|||||| ||| | |||||| ||||||| |||||||| || ||||| || ||||| ||||
Sbjct: 6 gcagacataccttcagtctctcactgtaagacttgaggaatggagacttaagcgaagaga 65
Query: 650 caccgaggagtggatgagacatcgccaactgccccaaaatctgagagaacgagttaggcg 709
||||||||||||||||||||||||||||| || || ||| ||| |||| ||| ||||
Sbjct: 66 taccgaggagtggatgagacatcgccaactccctgaagttctaagacaacgggttcggcg 125
Query: 710 atttgttcaatataaatggcttgcaactcgaggggctgatgaagagtcaattttgcgagc 769
||||||||||| || ||| ||||||| ||||||| ||||||| || || |||| |
Sbjct: 126 ctttgttcaatacaagtggattgcaacacgaggggtcaatgaagaatctatcctgcgtgg 185
Query: 770 attacctatagatcttcgtcgagacatccagcgccacctgtgcttggatcttgttcgacg 829
|| |||| ||||||||||| || |||||||||||| | ||||||||||||||||||||
Sbjct: 186 tttgcctactgatcttcgtcgtgatatccagcgccacttatgcttggatcttgttcgacg 245
Query: 830 agttccttttttctcacaaatggatgatcagctccttgatgccatatgtgagcgattggt 889
|| ||||| |||||||| |||||||||||| | |||||||| ||||||||||| ||||
Sbjct: 246 tgtccctttcttctcacagatggatgatcagttgcttgatgcaatatgtgagcgcctggt 305
Query: 890 gtcctccttgagtatccgaggc-acttgtatagtccgtgaaggtgatcctgttacagaga 948
|| || |||| | | |||| |||| ||| || ||||||||||||||||| || || |
Sbjct: 306 ttcgtcgctgagca-ctgagggtacttatattgttcgtgaaggtgatcctgtgactgaaa 364
Query: 949 tgcttttcattatcagaggaaggctagagagctctactacaaatggaggccggacaggtt 1008
||||||| ||||||||||| || || ||||| |||||||| ||||||||||| || ||||
Sbjct: 365 tgctttttattatcagaggtagactggagagttctactaccaatggaggccgcactggtt 424
Query: 1009 tcttcaattcaattactttgagacctggtgatttttgcggtgaagagctgcttacgtggg 1068
|||| || ||||||| |||| |||||| |||||||| || || ||||| || | ||||
Sbjct: 425 tctttaactcaattagattgaaacctggagatttttgtggagaggagctactgtcatggg 484
Query: 1069 cattgcttccaaaatctactctcaacttaccttcttccacaaggacagtccgagcactag 1128
| |||| ||||||||| |||||||||| ||||| || || || |||||| |||| ||
Sbjct: 485 ctttgcatccaaaatcctctctcaacttgccttcctcaactagaacagtcagagctttaa 544
Query: 1129 aggaagtggaagcatttgcattg 1151
| ||||| ||||| |||||||||
Sbjct: 545 atgaagttgaagcttttgcattg 567
>36522.m000003 conserved hypothetical protein
Length = 214
Score = 123 bits (62), Expect = 2e-27
Identities = 113/130 (86%)
Strand = Plus / Plus
Query: 89 ttctcagatgataaaaaccaatggagtagtcacaaagactgcttgggcaggggctgcata 148
|||| |||| || ||| ||| |||| |||||||||||||||||||||| |||||||| ||
Sbjct: 13 ttctgagatcatcaaagccactggaatagtcacaaagactgcttgggctggggctgccta 72
Query: 149 taatctcctactatacatgttggctagtcatgtcttgggggcctcgtggtatttattgtc 208
||| ||||| || ||||||||||||| ||||||||| || ||||| |||||| | |||||
Sbjct: 73 taacctcctgctctacatgttggctaatcatgtcttaggagcctcatggtatctgttgtc 132
Query: 209 aattgagcgt 218
||||||||||
Sbjct: 133 aattgagcgt 142
>30147.m013975 Cyclic nucleotide-gated ion channel, putative
Length = 2043
Score = 83.8 bits (42), Expect = 2e-15
Identities = 93/110 (84%)
Strand = Plus / Plus
Query: 945 gagatgcttttcattatcagaggaaggctagagagctctactacaaatggaggccggaca 1004
|||||||||||||| |||||||||| |||||||||||||| |||||||| || || ||
Sbjct: 1426 gagatgcttttcatcatcagaggaaatctagagagctctacaacaaatggtggaaggtca 1485
Query: 1005 ggtttcttcaattcaattactttgagacctggtgatttttgcggtgaaga 1054
||||| ||||| || ||||| ||||| | |||||||| ||||| |||||
Sbjct: 1486 ggttttttcaactctattacgctgagagcaggtgatttctgcggcgaaga 1535
>29822.m003360 Cyclic nucleotide-gated ion channel, putative
Length = 1965
Score = 79.8 bits (40), Expect = 3e-14
Identities = 52/56 (92%)
Strand = Plus / Plus
Query: 126 actgcttgggcaggggctgcatataatctcctactatacatgttggctagtcatgt 181
|||||||||||||| ||||||||||||||||| ||||||||| | |||||||||||
Sbjct: 652 actgcttgggcaggagctgcatataatctccttctatacatgcttgctagtcatgt 707
Score = 73.8 bits (37), Expect = 2e-12
Identities = 85/101 (84%)
Strand = Plus / Plus
Query: 577 tgattggaaatatgcagacctacttgcagtctatcactgtcagacttgaagagtggaggc 636
||||||| || |||||||| | ||||| ||||| || || ||| ||||||||||||||
Sbjct: 944 tgattggtaacatgcagactaatttgcaatctatgacggtaagagttgaagagtggagga 1003
Query: 637 tcaagcgccgagacaccgaggagtggatgagacatcgccaa 677
||||||| |||| || |||||||||||||| |||||||||
Sbjct: 1004 tcaagcgaagagatacagaggagtggatgaggcatcgccaa 1044
>28863.m000089 Cyclic nucleotide-gated ion channel, putative
Length = 1191
Score = 61.9 bits (31), Expect = 8e-09
Identities = 88/107 (82%)
Strand = Plus / Plus
Query: 75 atttttcctttaagttctcagatgataaaaaccaatggagtagtcacaaagactgcttgg 134
||||||||||| |||||| | || || ||| | | |||||||||||| | || ||||||
Sbjct: 700 atttttcctttgagttctgaaattatcaaagcaactggagtagtcactagaacagcttgg 759
Query: 135 gcaggggctgcatataatctcctactatacatgttggctagtcatgt 181
|||||||||| ||||||| | ||||| |||||| |||| || |||||
Sbjct: 760 gcaggggctgtatataatttgctactttacatgctggcaagccatgt 806
>30078.m002325 conserved hypothetical protein
Length = 636
Score = 58.0 bits (29), Expect = 1e-07
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 927 gaaggtgatcctgttacagagatgcttttcattatcagagg 967
||||| |||||||||| |||||||||||||||||||||||
Sbjct: 82 gaaggcgatcctgttaatgagatgcttttcattatcagagg 122