Jatropha Genome Database

JcCB0209291.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0209291.10 + phase: 0 /partial
         (499 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29680.m001708 conserved hypothetical protein                          321   2e-87

>29680.m001708 conserved hypothetical protein
          Length = 1182

 Score =  321 bits (162), Expect = 2e-87
 Identities = 377/451 (83%), Gaps = 12/451 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgttgtttcaagtaggaggtcaggggactcgtccaactttcttcgagatggctgctgca 60
           |||||||||||||||||||| || |||||||| || ||||||||||| ||||| ||||||
Sbjct: 1   atgttgtttcaagtaggaggacaagggactcggcctactttcttcgaaatggccgctgca 60

                                                                       
Query: 61  caacaacttccggccagtctgcgggccgctctcacctactccataggggtattggcttta 120
           |||||||||||| | || || || || ||||| |||||||||||||| ||||||||  ||
Sbjct: 61  caacaacttccgacgagcctccgtgcagctctaacctactccataggcgtattggcacta 120

                                                                       
Query: 121 agaagaccacttcttcataaagtgttagattatgaagatgaattctttgctttgcttatg 180
           |||||||| || ||||| ||||| ||||| |||||||||||||||||||||||| | |||
Sbjct: 121 agaagacctctccttcacaaagtattagactatgaagatgaattctttgctttgttcatg 180

                                                                       
Query: 181 ctggttctcgaaacacatagcttgcggataacagatgcttctttttctgaatctctatat 240
            ||||||| || ||||| ||||| || |  ||||||||||| |||||||||||||| |||
Sbjct: 181 ttggttcttgagacacacagcttacgaactacagatgcttccttttctgaatctctgtat 240

                                                                       
Query: 241 ggattgcgaagaagagcagtgaagataaaagcaaagaa------------tttgagctca 288
           |||||||| ||||||| ||| |||||| |||  |||||            ||||| || |
Sbjct: 241 ggattgcggagaagaggagtcaagatacaagtgaagaagaaggatgctcgtttgaactta 300

                                                                       
Query: 289 ggggaagcaattgaactctctggattacagaagcaccaaagagttctctcagttgcattt 348
           ||||| |  |||||||||||||||||||| ||||  |||||| |||| |||||||| |||
Sbjct: 301 ggggatgggattgaactctctggattacaaaagcgtcaaagaattctttcagttgctttt 360

                                                                       
Query: 349 ctggttgtgttgccttatttcaagtcaaaattgcattcgatatataacaaagaaagggat 408
           ||||||||||| |||||||| ||||||||  || | ||  ||||||||||||||||||| 
Sbjct: 361 ctggttgtgttaccttattttaagtcaaagctgtactcactatataacaaagaaagggaa 420

                                          
Query: 409 gccaggcttcaatcgagtttgtggggagatg 439
           |||||||||||| | ||||| ||||||||||
Sbjct: 421 gccaggcttcaagcaagtttatggggagatg 451