Jatropha Genome Database

JcCB0207431.30
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0207431.30 - phase: 1 /pseudo/partial
         (308 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30174.m008887 nucleotide binding protein, putative                    151   3e-36

>30174.m008887 nucleotide binding protein, putative
          Length = 1317

 Score =  151 bits (76), Expect = 3e-36
 Identities = 115/128 (89%)
 Strand = Plus / Plus

                                                                        
Query: 20   actttgcattatgatcgactcagtttatcccccaatgggaagatactggcagcaacccac 79
            |||||||||||||||||||| |||||||||||  ||||||||||||||||||||||| | 
Sbjct: 1057 actttgcattatgatcgacttagtttatcccctgatgggaagatactggcagcaaccaat 1116

                                                                        
Query: 80   ggctcaacattgcagtggttatgcgtggaaaccggaaatgttctagacacagctgaaaaa 139
            || || ||||||||||||||||| || ||||| ||||| ||||||||||||||||| |||
Sbjct: 1117 ggttccacattgcagtggttatgtgttgaaactggaaaggttctagacacagctgataaa 1176

                    
Query: 140  gcccatga 147
            || |||||
Sbjct: 1177 gcacatga 1184



 Score = 93.7 bits (47), Expect = 6e-19
 Identities = 89/103 (86%)
 Strand = Plus / Plus

                                                                        
Query: 184  aaatcacatggatggcatgggcgcctaaggccattccaacaggtaatggacagggcttgg 243
            ||||||||||||| ||||||||||| ||| |||| ||||  ||| |||||||||   |||
Sbjct: 1190 aaatcacatggatcgcatgggcgccaaagaccatcccaaatggtgatggacaggctatgg 1249

                                                       
Query: 244  tattggcaacggctagtgttgacaagaaagtgaaattatgggc 286
            | ||||| || |||||||||||||||||||| |||||||||||
Sbjct: 1250 ttttggccacagctagtgttgacaagaaagtaaaattatgggc 1292