Jatropha Genome Database

JcCB0200811.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0200811.10 + phase: 1 /pseudo/partial
         (158 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m014070 auxilin, putative                                       165   9e-41
29634.m002111 auxilin, putative                                        54   2e-07

>30170.m014070 auxilin, putative
          Length = 4329

 Score =  165 bits (83), Expect = 9e-41
 Identities = 107/115 (93%)
 Strand = Plus / Plus

                                                                        
Query: 15   ttgttcatcctgacaagttgcagcaaaggggtgcaagcatacagcagaaatacacgtgtg 74
            ||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||
Sbjct: 4211 ttgttcatcctgacaagctacaacaaaggggtgcaagcatacagcagaaatacacgtgtg 4270

                                                                   
Query: 75   agaaagtctttgatcttctaaaggatgcttggaacaaattcagtgcagaagaacg 129
            | ||||| ||||||||||| |||||||| ||||||||||||||||| ||||||||
Sbjct: 4271 aaaaagtttttgatcttctgaaggatgcctggaacaaattcagtgctgaagaacg 4325


>29634.m002111 auxilin, putative
          Length = 4656

 Score = 54.0 bits (27), Expect = 2e-07
 Identities = 66/79 (83%)
 Strand = Plus / Plus

                                                                        
Query: 20   catcctgacaagttgcagcaaaggggtgcaagcatacagcagaaatacacgtgtgagaaa 79
            ||||||||||| || || ||| | || ||||| || |||||||||||||  |||||||| 
Sbjct: 4534 catcctgacaaattacaacaacgtggcgcaagtattcagcagaaatacatatgtgagaag 4593

                               
Query: 80   gtctttgatcttctaaagg 98
            || ||||||||||| ||||
Sbjct: 4594 gtgtttgatcttctgaagg 4612