Jatropha Genome Database
- JcCB0198751.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0198751.10 + phase: 1 /partial
(1737 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30138.m004035 conserved hypothetical protein 708 0.0
29848.m004543 DNA binding protein, putative 60 5e-08
>30138.m004035 conserved hypothetical protein
Length = 4653
Score = 708 bits (357), Expect = 0.0
Identities = 690/801 (86%)
Strand = Plus / Plus
Query: 1 aaggggacaggcgaagtcaaatatcagacattttatctcaatacgatatgacagtcatgg 60
|||| |||||||| || ||||| ||||| |||||||||||||||||||||||||| ||||
Sbjct: 200 aaggagacaggcggagccaaatctcagatattttatctcaatacgatatgacagttatgg 259
Query: 61 attatcctcgtcaatatgaagggtgtcccatgcttccgctggaaatgatccaccatttcc 120
|||||||||||||||||||||| ||||| ||||||||| | || |||||||| ||||| |
Sbjct: 260 attatcctcgtcaatatgaaggttgtcctatgcttccgttagagatgatccatcattttc 319
Query: 121 ttcgatctagtgaaagttggttgtctttggaggggcaacaaaatgttttgttaatgcact 180
|||||||||||||||||||| |||| || || || || |||||||| ||||||||||| |
Sbjct: 320 ttcgatctagtgaaagttggctgtccttagaaggccagcaaaatgtgttgttaatgcatt 379
Query: 181 gtgaaagaggaggatggcctgtcttggcattcatgcttgcaggtcttttgttatatcgga 240
|||||||||| ||||||||||| | || |||||||||||||||||||| || || |||
Sbjct: 380 gtgaaagagggggatggcctgtgcttgctttcatgcttgcaggtcttttattgtacagga 439
Query: 241 aacagtatagcggggagcagaagactcttgaaatggtctacaagcaagctcctaaagaac 300
||||||||| || ||||| ||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 440 aacagtatactggagagcaaaagacacttgaaatggtatacaagcaagctcctaaagaac 499
Query: 301 ttctgcaccttttgtctcctttaaatccacaaccttctcaactaagatatctgcagtaca 360
| || || ||||| ||||||||||||||||| ||||| |||||||||||||| |||||||
Sbjct: 500 tgcttcatcttttatctcctttaaatccacagccttcacaactaagatatctccagtaca 559
Query: 361 tttctagaagaaattttggttctgagtggcctccatctgatacgcctttggttttagatt 420
| ||||||||||| |||||||||| |||||||| |||||||| ||||| ||||||||||
Sbjct: 560 tctctagaagaaaccttggttctgattggcctccttctgatactcctttagttttagatt 619
Query: 421 gtctgatgcttagggcccttccaatattcggcggtgggaagggttgtaggcccgttgtac 480
|| |||||||||||||||||||| | || | || || || ||||| ||||| |||||||
Sbjct: 620 gtttgatgcttagggcccttccattgtttgaggggggtaaaggttgcaggccagttgtac 679
Query: 481 gtgtttatggtcaggatgctagaaagccagccaatagaacttctaagcttctgttctcaa 540
|||| | |||||||||| || ||| |||||||||||||||||||||||||| |||||||
Sbjct: 680 gtgtctttggtcaggattcttcaaaaccagccaatagaacttctaagcttcttttctcaa 739
Query: 541 cttccaaggcgaaaaaacatcttcggcactattcacaggacgagtgtctgctagtgaaaa 600
|||| ||| | ||||||||| | ||||| || |||||| || ||| |||| |||||||
Sbjct: 740 cttcaaagacaaaaaaacatgtccggcattacctacaggaagaatgtatgctggtgaaaa 799
Query: 601 tagatataagatgccgcattcaaggggatgttgttcttgaatgcatacatttggatgaag 660
||||| | | ||||| |||| |||||||||||| |||||||||| ||||| |||||||
Sbjct: 800 tagatgtccgctgccgtgttcagggggatgttgttattgaatgcatccatttagatgaag 859
Query: 661 atcttgtccacgaggagatgatatttagaattatgttccacacggcatttgttagagcaa 720
||||||| | || |||||||| || ||| ||||||| || |||||||||||||| ||||
Sbjct: 860 atcttgttcgtgaagagatgattttcagagttatgtttcatacggcatttgttagggcaa 919
Query: 721 atattctgattctctgtcgtgatgaaattgacattctctgggatgccaaggaccaatttc 780
||||| |||| || |||||||||||||| ||| | ||||||||||||||||||||||
Sbjct: 920 atattttgatgctttgtcgtgatgaaatagacgcaatgtgggatgccaaggaccaatttc 979
Query: 781 caaaggagtttaaggcagagg 801
||||||| |||||||||||||
Sbjct: 980 caaaggaatttaaggcagagg 1000
Score = 153 bits (77), Expect = 4e-36
Identities = 226/275 (82%), Gaps = 3/275 (1%)
Strand = Plus / Plus
Query: 934 taaagttaagtgttgatcatggtagacaaaaggttgagaaggtagtgccaccttccccta 993
||||||||| ||||||| |||||||||| | ||||||||| |||| |||||||||
Sbjct: 1640 taaagttaactgttgatgttggtagacaacaacaggagaaggtaatgccgccttcccctg 1699
Query: 994 agagacaacctacttcgaacacaaaacctgttgttgcggattcagctgcagtgaaacaaa 1053
||||||| |||| ||||||| |||||||| || | |||||| ||| |||| |||| |
Sbjct: 1700 ggagacaaactacctcgaacaaaaaacctgctg---cagattcaactgtagtggaacaga 1756
Query: 1054 aaatcaaacagcttgaaccgctgggaactaatggaaaacaagcaaggccaagtactgtac 1113
|| ||| | | |||||||| | ||| | |||||||||||||||||||||| ||| || |
Sbjct: 1757 aagtcatagaacttgaacctcaaggagcaaatggaaaacaagcaaggccaaataccgtgc 1816
Query: 1114 cccgttggataacccctaataaagctccttttgctaattcaatgcatgtagcacatccgc 1173
| |||||| | |||||||||||| |||||||| ||||||| | |||||||||||| |
Sbjct: 1817 ctcgttgggttccccctaataaagtcccttttgccaattcaaatcttgtagcacatccac 1876
Query: 1174 catctagatataatagtgcaccatctgctcttgcc 1208
||||||||||||| ||||||||| |||||||||||
Sbjct: 1877 catctagatataacagtgcaccacctgctcttgcc 1911
>29848.m004543 DNA binding protein, putative
Length = 3801
Score = 60.0 bits (30), Expect = 5e-08
Identities = 87/106 (82%)
Strand = Plus / Plus
Query: 157 aacaaaatgttttgttaatgcactgtgaaagaggaggatggcctgtcttggcattcatgc 216
|||||||||| | || ||||| |||||| |||| |||||||| || |||||||||||||
Sbjct: 353 aacaaaatgtactcttgatgcattgtgaacgaggtggatggccagttttggcattcatgc 412
Query: 217 ttgcaggtcttttgttatatcggaaacagtatagcggggagcagaa 262
|||| ||| ||| ||||| |||| |||| || |||||||||||
Sbjct: 413 ttgcttctctcttgatatataggaagcagttcagtggggagcagaa 458