Jatropha Genome Database

JcCB0192641.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0192641.10 + phase: 0 /pseudo
         (704 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30138.m003899 conserved hypothetical protein                          355   2e-97

>30138.m003899 conserved hypothetical protein
          Length = 1047

 Score =  355 bits (179), Expect = 2e-97
 Identities = 386/455 (84%)
 Strand = Plus / Plus

                                                                       
Query: 1   atattgagagatcttatacctcatagtgatcaaaagagagatacagcatcatttctattg 60
           |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| 
Sbjct: 217 atattgagagatcttatacctcatagtgatcaaaagagggatacggcatcatttctatta 276

                                                                       
Query: 61  gaggtgattgaatatgtgcagtacttacaggaaaaggtgcaaaaatatgagggttcgtac 120
           |||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 277 gaggtgatagaatatgtccagtacttacaggaaaaggtgcaaaaatatgagggttcttac 336

                                                                       
Query: 121 cagggttggacttctgagccgactaagttaatgccatggagaaatagtcactggcgtgtt 180
           || || |||| ||||||||| || || || |||||||||||||||||||| ||||| || 
Sbjct: 337 caaggatggagttctgagcccacaaaattgatgccatggagaaatagtcattggcgcgtc 396

                                                                       
Query: 181 caaagtttcatgggtcacccacaaacagtaaaaaatggttctggtccagggttaacattt 240
           || |||||||| ||||| |||||| |  |||||||||||||||||||||||| |||  ||
Sbjct: 397 cagagtttcattggtcatccacaacctataaaaaatggttctggtccagggtcaaccatt 456

                                                                       
Query: 241 ccaggaaaatttgatgaaaataacattgccatcagccctagcatgcttacaagtacacag 300
           || || || ||||| || ||||  |||||||||| ||| | |||||||||| |  |||| 
Sbjct: 457 cctgggaagtttgacgagaatacaattgccatcaacccaaccatgcttacaggcgcacaa 516

                                                                       
Query: 301 aatctagtagaaccagacactagcagggatattgcttccaaaggaatggaacggcaacct 360
           |||| ||||||| | ||| ||||||||||| || ||| ||||| |||||| || || |||
Sbjct: 517 aatcaagtagaatctgaccctagcagggatgttacttgcaaagcaatggaccgacatcct 576

                                                                       
Query: 361 gaattagcaaacaaggttatgcctctgcccatgtccttgcagacgaccatgcctactcct 420
           ||| |||||||||||||| ||| ||  ||  | ||||| ||||| ||||| || | ||||
Sbjct: 577 gaagtagcaaacaaggttttgcttcatcctgtttccttacagacaaccatacccattcct 636

                                              
Query: 421 gttcaaagtgatggtgttgttgcaaatcctcttca 455
           || || |||||||||| | ||||| ||||| ||||
Sbjct: 637 gtccatagtgatggtgctattgcacatcctgttca 671



 Score = 54.0 bits (27), Expect = 1e-06
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                      
Query: 417 tcctgttcaaagtgatggtgttgttgcaaatcctcttcagcaa 459
           ||||||||| |||||||||| | ||||| ||||||||||||||
Sbjct: 663 tcctgttcatagtgatggtgctattgcacatcctcttcagcaa 705



 Score = 52.0 bits (26), Expect = 5e-06
 Identities = 56/66 (84%)
 Strand = Plus / Plus

                                                                       
Query: 511 aaccagcaggagaaggtgccgattgaaggggggactatcagcatttcaagcgtgtactct 570
           |||||||||||| || || | ||||||||||| || || ||||| || || |||||||||
Sbjct: 757 aaccagcaggaggagctgacaattgaagggggaaccataagcatctccagtgtgtactct 816

                 
Query: 571 caaggg 576
           ||||||
Sbjct: 817 caaggg 822