Jatropha Genome Database

JcCB0192111.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0192111.10 + phase: 2 /pseudo/partial
         (790 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30003.m000326 Synaptic glycoprotein SC2, putative                     250   1e-65

>30003.m000326 Synaptic glycoprotein SC2, putative
          Length = 933

 Score =  250 bits (126), Expect = 1e-65
 Identities = 367/449 (81%), Gaps = 15/449 (3%)
 Strand = Plus / Plus

                                                                       
Query: 266 tgcttcctctacttcaaatgtatcatggaaacactttttgttctgtgatttagccatgca 325
           |||||||  ||||||||| |||||||||||||| ||||||| |   ||||||||||||||
Sbjct: 415 tgcttccattacttcaaacgtatcatggaaacattttttgtgcaccgatttagccatgca 474

                                                                       
Query: 326 ccaccactg---tgtaatgtgttccgaaattgttcttcttactggacatttggttgctac 382
            || ||| |   |  ||||| |||||||||||| ||| ||| ||||| ||||||| ||| 
Sbjct: 475 acatcaccgctctccaatgttttccgaaattgtgcttattattggacctttggttcctat 534

                                                                       
Query: 383 atggcttactatgtaaaccacccactttatgctcctgttagtgatcttcaatgaaagatt 442
           || ||||||||||| ||||||||||||||  |||||||| |||||||||||   ||||||
Sbjct: 535 attgcttactatgtgaaccacccactttacactcctgttggtgatcttcaaatgaagatt 594

                                                                       
Query: 443 gggttttggctttggtttgatttgtcaagttgcaagcttctattgccatatcttgttggn 502
           || |||||| |||||||||||||||||| |||| | ||||||||| || |||||| ||  
Sbjct: 595 gg-ttttggttttggtttgatttgtcaaattgccaacttctattgtcacatcttgctg-- 651

                                                                       
Query: 503 nnnnnnnnnnnnnntctttgcagtccagattggagtggagggtatcaaatcccacgtggg 562
                         |||| |||| || ||| | |||||||| ||||||||||||| ||||
Sbjct: 652 ---------aaaaatcttcgcagccctgatggcagtggaggttatcaaatcccacatggg 702

                                                                       
Query: 563 tttctctttaacatggtgacatgttcaaattacacaacagaggtttatcagtggttgggt 622
           |||||||| || || ||||||||  |||| |||||||||||  |||| ||||||||||||
Sbjct: 703 tttctcttcaatattgtgacatgcgcaaactacacaacagaaatttaccagtggttgggt 762

                                                                       
Query: 623 ttcaatattgctatgcagactgttgcaggctacttctttcttgtggttgcttctatgatc 682
           ||||||||||| | ||||||||||||||||||  ||||||||||||||||  ||  ||||
Sbjct: 763 ttcaatattgcaacgcagactgttgcaggctatatctttcttgtggttgccgcttcgatc 822

                                        
Query: 683 atgaccaattgggcttttgcaaaccaccg 711
           ||||||||||||||  ||||||| |||||
Sbjct: 823 atgaccaattgggcccttgcaaagcaccg 851